BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC5ZA09RM1.SCF screened BAC_end
(1008 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1596 862 0.0
>3x_Contig1596
Length = 11686
Score = 862 bits (435), Expect = 0.0
Identities = 479/491 (97%), Gaps = 2/491 (0%)
Strand = Plus / Plus
Query: 82 ctttcgaattgaagcaacaagttgacttggctgctgaagccaagtctgtattggactcat 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9800 ctttcgaattgaagcaacaagttgacttggctgctgaagccaagtctgtattggactcat 9859
Query: 142 gggtcagatacgaagcctctgttcgtcaattacaacaacaacaaatcgctgactccgttg 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9860 gggtcagatacgaagcctctgttcgtcaattacaacaacaacaaatcgctgactccgttg 9919
Query: 202 tcgccaaggttcaaagtgaattgggtaaccctaagttccaagaaaaggtcttgtatcaat 261
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 9920 tcgccaaggttcaaagtgaattgggtaaccctaagttccaagaaaaggtcttgcaacaat 9979
Query: 262 ccgttgctgacgtggaaaagttgttggctaacttgaaataagtttgatttacatattgtc 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9980 ccgttgctgacgtggaaaagttgttggctaacttgaaataagtttgatttacatattgtc 10039
Query: 322 tctccctgttttagaagagcaccgtgtttttcttaacttcttttcaatatatttacaaca 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10040 tctccctgttttagaagagcaccgtgtttttcttaacttcttttcaatatatttacaaca 10099
Query: 382 accaaactaaaaaccacaacgtacaatgactttttgaataatgttagccgcaaattaaga 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10100 accaaactaaaaaccacaacgtacaatgactttttgaataatgttagccgcaaattaaga 10159
Query: 442 aataaaagaccacttttacatttgtcatgtcttttcgattcttttgacatgattataatg 501
||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 10160 aataaaagaccac-tttacatttgtcatgtcttttcgatacttttgacatgattataatg 10218
Query: 502 gctttttcgaaggccattgctggctctttgcttgcttcatattcaaaactattgggccct 561
||||||| |||||| |||||||||||| ||| |||||||||||| |||||| |||||||
Sbjct: 10219 gcttttttgaaggcaattgctggctctatgcgtgcttcatattc-aaactaatgggcccc 10277
Query: 562 tttttgaaact 572
||| |||||||
Sbjct: 10278 tttatgaaact 10288
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 17,191
Number of Sequences: 1807
Number of extensions: 17191
Number of successful extensions: 303
Number of sequences better than 1.0e-20: 1
length of query: 1008
length of database: 10,358,551
effective HSP length: 16
effective length of query: 992
effective length of database: 10,329,639
effective search space: 10247001888
effective search space used: 10247001888
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)