BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC5ZA10FM1.SCF screened BAC_end
(928 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1644 979 0.0
>3x_Contig1644
Length = 13148
Score = 979 bits (494), Expect = 0.0
Identities = 594/612 (97%), Gaps = 13/612 (2%)
Strand = Plus / Plus
Query: 85 tcaccatctttgaagaatcactaagtgattccaaagttcaattccaagcactcgtgaata 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11685 tcaccatctttgaagaatcactaagtgattccaaagttcaattccaagcactcgtgaata 11744
Query: 145 tggctcaggtattacaaaagaccagatcattatacaacgatgaaggttactatgatactt 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11745 tggctcaggtattacaaaagaccagatcattatacaacgatgaaggttactatgatactt 11804
Query: 205 tgataacaaggtgtacgttacatggttcgaagctcttgaaaaaaacagatcaatgccgtg 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11805 tgataacaaggtgtacgttacatggttcgaagctcttgaaaaaaacagatcaatgccgtg 11864
Query: 265 cggtttacctctgctcacatttatggtgggcaactgaactcactctgatcggtgaagaag 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11865 cggtttacctctgctcacatttatggtgggcaactgaactcactctgatcggtgaagaag 11924
Query: 325 aaggtgttaccaaaaacttcttccgtgaaggtaaacgtgttctcgaatgtttgcaacgct 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11925 aaggtgttaccaaaaacttcttccgtgaaggtaaacgtgttctcgaatgtttgcaacgct 11984
Query: 385 ctttacgtgttgcggactccataatggacaacgttcaaagctgtcaacttatggtggaga 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11985 ctttacgtgttgcggactccataatggacaacgttcaaagctgtcaacttatggtggaga 12044
Query: 445 tcttaggtagctgttgttactatttcatacacggagacgaatcgnagacacatgtcggtg 504
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 12045 tcttaggtagctgttgttactatttcatacacggagacgaatcggagacacatgtcggtg 12104
Query: 505 ttaaatacatagcaggtttggttagaactcatacaagcgaatttgaaaggattgcaactt 564
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct: 12105 ttaaatacatagcaggtttgg-tagaactcatacaagcgaatttgaaaggattgcaac-t 12162
Query: 565 agaggaattcgggagaagtacagggattttactgcccccatcacaaactattggtcattt 624
||||||| || ||||||||||| ||||||||||| ||||||||||||||||| |||| ||
Sbjct: 12163 agaggaa-tccggagaagtaca-ggattttactg-ccccatcacaaactatt-gtca-tt 12217
Query: 625 ggatgtgacggcttcgtacaatttgcaagacctttattcctcctccaaatgcattggttt 684
|||||||||||| |||||| || ||||||||||| |||||||||| ||||| ||||||
Sbjct: 12218 ggatgtgacggc-tcgtac-atctgcaagacctt--atcctcctccacatgca-tggttt 12272
Query: 685 cttagtaagatt 696
| ||||||||||
Sbjct: 12273 c-tagtaagatt 12283
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7719
Number of Sequences: 1807
Number of extensions: 7719
Number of successful extensions: 94
Number of sequences better than 1.0e-20: 1
length of query: 928
length of database: 10,358,551
effective HSP length: 16
effective length of query: 912
effective length of database: 10,329,639
effective search space: 9420630768
effective search space used: 9420630768
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)