BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC5ZA10RM1.SCF screened BAC_end
         (885 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1747                                                         981   0.0  

>3x_Contig1747 
          Length = 15671

 Score =  981 bits (495), Expect = 0.0
 Identities = 515/519 (99%), Gaps = 2/519 (0%)
 Strand = Plus / Plus

                                                                        
Query: 49   tacgtaactaccgtgtaagtataattcggtttttgctttgcagctaaggctaaaagtcat 108
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6114 tacgtaactaccgtgtaagtataattcggtttttgctttgcagctaaggctaaaagtcat 6173

                                                                        
Query: 109  aggttttagcattgttacctggtggaaagttgcgggctacacgagtcgattgttgtggtt 168
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6174 aggttttagcattgttacctggtggaaagttgcgggctacacgagtcgattgttgtggtt 6233

                                                                        
Query: 169  tgtatttgtttgaacaacgatagggttatatcgatataatttttgaagatcggataacag 228
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6234 tgtatttgtttgaacaacgatagggttatatcgatataatttttgaagatcggataacag 6293

                                                                        
Query: 229  aacttaaattgttcaagactgataagatttattctcccagcttagagagactagccaaga 288
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6294 aacttaaattgttcaagactgataagatttattctcccagcttagagagactagccaaga 6353

                                                                        
Query: 289  gttgaagatgccttggccagccaaatatactggttgatttttacttgcccttttacgcta 348
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6354 gttgaagatgccttggccagccaaatatactggttgatttttacttgcccttttacgcta 6413

                                                                        
Query: 349  aagaaactttcaagaactatgtaatatggtgaaagagtaagcattcaataactttttcca 408
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6414 aagaaactttcaagaactatgtaatatggtgaaagagtaagcattcaataactttttcca 6473

                                                                        
Query: 409  ttttatatccgagagaacatcggtagggtaagctgaatatgatgtgaaagggcagtcagt 468
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6474 ttttatatccgagagaacatcggtagggtaagctgaatatgatgtgaaagggcagtcagt 6533

                                                                        
Query: 469  cgtattatatagcttggcgtgagatgaagatcgtttgctaatcca-gtttccagtatttc 527
            ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 6534 cgtattatatagcttggcgtgagatgaagatcgtttgctaatccaggttaccagtatttc 6593

                                                   
Query: 528  gctttaaaattagtggtttcttacatttgctttgtcttt 566
            || |||||||||||||||||||||||||||| |||||||
Sbjct: 6594 gc-ttaaaattagtggtttcttacatttgctatgtcttt 6631


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9931
Number of Sequences: 1807
Number of extensions: 9931
Number of successful extensions: 108
Number of sequences better than 1.0e-20: 1
length of query: 885
length of database: 10,358,551
effective HSP length: 16
effective length of query: 869
effective length of database: 10,329,639
effective search space: 8976456291
effective search space used: 8976456291
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)