BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC5ZA11FM1.SCF screened BAC_end
(956 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1426 1146 0.0
>3x_Contig1426
Length = 8319
Score = 1146 bits (578), Expect = 0.0
Identities = 628/641 (97%), Gaps = 3/641 (0%)
Strand = Plus / Plus
Query: 89 ccagcagatgtatatttgccagcaaattcatggatgattccttttttaaaaagtactccg 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5947 ccagcagatgtatatttgccagcaaattcatggatgattccttttttaaaaagtactccg 6006
Query: 149 gatttgatcgcttctgagagaattcatcttagagacatatcacttaaaaaatgatttttc 208
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 6007 gatttgatcgcttctgagagaatccatcttagagacatatcacttaaaaaatgatttttc 6066
Query: 209 tcagtgatanccgttggccaactcccaccaatatctgagtgatcgcctggaaaccacttc 268
||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6067 tcagtgatatccggtggccaactcccaccaatatctgagtgatcgcctggaaaccacttc 6126
Query: 269 tctattagatccgatgatgtccttttactatcaaaagtaccatggggagagtccacctcg 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6127 tctattagatccgatgatgtccttttactatcaaaagtaccatggggagagtccacctcg 6186
Query: 329 aatataccttcaactctctggttcacgaaattatctgttctttgggaatgttccagctct 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6187 aatataccttcaactctctggttcacgaaattatctgttctttgggaatgttccagctct 6246
Query: 389 aggaaattgttgattcgggatattagttcttgtacggacttactagattgtgattgtgat 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6247 aggaaattgttgattcgggatattagttcttgtacggacttactagattgtgattgtgat 6306
Query: 449 gaattaggtcttgagccaatggtatgatttataaattggttactggtactgtgatagttt 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6307 gaattaggtcttgagccaatggtatgatttataaattggttactggtactgtgatagttt 6366
Query: 509 gttttcggggcaacattctcatattctatgacataatttctatagttcaacgaaaataaa 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6367 gttttcggggcaacattctcatattctatgacataatttctatagttcaacgaaaataaa 6426
Query: 569 tttggtctataaggattaggggaaaacgactgttgtttgaacttccctcttctttcgtca 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6427 tttggtctataaggattaggggaaaacgactgttgtttgaacttccctcttctttcgtca 6486
Query: 629 atgctaaccgcatgtctgatgtgacgaacgatgcccgttcctagctggattaggaaagag 688
||||||||||||||||||||||||||||||||| ||| ||||||||| || ||||||||
Sbjct: 6487 atgctaaccgcatgtctgatgtgacgaacgatg-ccgctcctagctgtatagggaaagag 6545
Query: 689 cccatcttaaagtataccccaaggaattcacccgaatcaaa 729
|| |||| |||||||||| ||| ||||||| ||||||||||
Sbjct: 6546 ccgatctaaaagtataccacaa-gaattca-ccgaatcaaa 6584
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7316
Number of Sequences: 1807
Number of extensions: 7316
Number of successful extensions: 56
Number of sequences better than 1.0e-20: 1
length of query: 956
length of database: 10,358,551
effective HSP length: 16
effective length of query: 940
effective length of database: 10,329,639
effective search space: 9709860660
effective search space used: 9709860660
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)