BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC5ZA11RM1.SCF screened BAC_end
(992 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1517 942 0.0
3x_Contig38 852 0.0
>3x_Contig1517
Length = 8289
Score = 942 bits (475), Expect = 0.0
Identities = 526/539 (97%), Gaps = 3/539 (0%)
Strand = Plus / Plus
Query: 49 taccacagatcgccagtcataccattttattacctgcgagttaaactgtcgtacatgatc 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4617 taccacagatcgccagtcataccattttattacctgcgagttaaactgtcgtacatgatc 4676
Query: 109 gaatattctttcatatatcttatcatttttgtttgaaccactcaattcgcgttcaactac 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4677 gaatattctttcatatatcttatcatttttgtttgaaccactcaattcgcgttcaactac 4736
Query: 169 atcccacatccttttatttacaactgctttgaatgagttcaaccctgaatcaattttatg 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4737 atcccacatccttttatttacaactgctttgaatgagttcaaccctgaatcaattttatg 4796
Query: 229 tttctttatcccatcggttcccctaggagccaacgataggttttcgaaatcatatattag 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4797 tttctttatcccatcggttcccctaggagccaacgataggttttcgaaatcatatattag 4856
Query: 289 ccgttgtttcttatagttatcgattcctatcgggtcaggactccttgacctcttcatctt 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4857 ccgttgtttcttatagttatcgattcctatcgggtcaggactccttgacctcttcatctt 4916
Query: 349 gaagcctgatgacattgtatagctaataccttgctcattcgcagtgaactattctaagca 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4917 gaagcctgatgacattgtatagctaataccttgctcattcgcagtgaactattctaagca 4976
Query: 409 gatgatctgttcgctgctacttttgtaggtgttgtttcgtttgtcctaatttatcttatg 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4977 gatgatctgttcgctgctacttttgtaggtgttgtttcgtttgtcctaatttatcttatg 5036
Query: 469 gccaaccgagaactttcttgaagctttaaatgaagatctttagaaattttttgtaaattc 528
|||||||||||||||||| ||||||| ||||||||||| ||||||| | |||||||||||
Sbjct: 5037 gccaaccgagaactttctggaagcttaaaatgaagatcattagaaa-tgtttgtaaattc 5095
Query: 529 acccgtttagaaaagtttcgttgatgaaagctggtacttcaggtactgggtatcctttt 587
||||||| || |||||||||| |||| |||||| |||| |||||||||| |||| ||||
Sbjct: 5096 acccgttaag-aaagtttcgtagatg-aagctgatactacaggtactggttatcttttt 5152
>3x_Contig38
Length = 925
Score = 852 bits (430), Expect = 0.0
Identities = 477/493 (96%), Gaps = 11/493 (2%)
Strand = Plus / Plus
Query: 49 taccacagatcgccagtcataccattttattacctgcgagttaaactgtcgtacatgatc 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 100 taccacagatcgccagtcataccattttattacctgcgagttaaactgtcgtacatgatc 159
Query: 109 gaatattctttcatatatcttatcatttttgtttgaaccactcaattcgcgttcaactac 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160 gaatattctttcatatatcttatcatttttgtttgaaccactcaattcgcgttcaactac 219
Query: 169 atcccacatccttttatttacaactgctttgaatgagttcaaccctgaatcaattttatg 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 atcccacatccttttatttacaactgctttgaatgagttcaaccctgaatcaattttatg 279
Query: 229 tttctttatcccatcggttcccctaggagccaacgataggttttcgaaatcatatattag 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 tttctttatcccatcggttcccctaggagccaacgataggttttcgaaatcatatattag 339
Query: 289 ccgttgtttcttatagttatcgattcctatcgggtcaggactccttgacctcttcatctt 348
|||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 340 ccgttgtttcttatagttatcg----------ggtcaggactccttgacctcttcatctt 389
Query: 349 gaagcctgatgacattgtatagctaataccttgctcattcgcagtgaactattctaagca 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 gaagcctgatgacattgtatagctaataccttgctcattcgcagtgaactattctaagca 449
Query: 409 gatgatctgttcgctgctacttttgtaggtgttgtttcgtttgtcctaatttatcttatg 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 gatgatctgttcgctgctacttttgtaggtgttgtttcgtttgtcctaatttatcttatg 509
Query: 469 gccaaccgagaactttcttgaagctttaaatgaagatctttagaaattttttgtaaattc 528
|||||||||||||||||| ||||||| ||||||||||| ||||||| | |||||||||||
Sbjct: 510 gccaaccgagaactttctggaagcttaaaatgaagatcattagaaa-tgtttgtaaattc 568
Query: 529 acccgtttagaaa 541
||||||| |||||
Sbjct: 569 acccgttaagaaa 581
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9898
Number of Sequences: 1807
Number of extensions: 9898
Number of successful extensions: 73
Number of sequences better than 1.0e-20: 2
length of query: 992
length of database: 10,358,551
effective HSP length: 16
effective length of query: 976
effective length of database: 10,329,639
effective search space: 10081727664
effective search space used: 10081727664
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)