BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC5ZA12FM1.SCF screened BAC_end
(1018 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig537 829 0.0
>3x_Contig537
Length = 3151
Score = 829 bits (418), Expect = 0.0
Identities = 450/461 (97%)
Strand = Plus / Minus
Query: 123 tcgaacccttcagtagttgctgcttcaggttccaactcctttcctcaccaaggttggatt 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1669 tcgaacccttcagtagttgctgcttcaggttccaactcctttcctcaccaaggttggatt 1610
Query: 183 gcttcacttgactgggcctttgtttacacttcaaatgcaaagacaggggattatttcact 242
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 1609 gcttcacttgactgggcctttgaagacacttcaaatgcaaagacaggggattatttcact 1550
Query: 243 atcacaatgctttttttttacaaggntaagtttaacgagggggacacctcatttaaggta 302
|||||||||| | | ||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1549 atcacaatgccccatgtctacaaggttaagtttaacgagggggacacctcatttaaggta 1490
Query: 303 aacttggatgataacaccgaagtttttgaatgctatgctccccagcaagctgcatataaa 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1489 aacttggatgataacaccgaagtttttgaatgctatgctccccagcaagctgcatataaa 1430
Query: 363 tacgaggacacaatactcaaatgctatgctgtaactgatatttctgcttatgaatctata 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1429 tacgaggacacaatactcaaatgctatgctgtaactgatatttctgcttatgaatctata 1370
Query: 423 tcgggttctcttaccgcgacgttggttctctctaacggcggttctgcatatccaccagag 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1369 tcgggttctcttaccgcgacgttggttctctctaacggcggttctgcatatccaccagag 1310
Query: 483 ctttctaatgcgaactatttttcatctggagagaatacattgtattttaacgatattgaa 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1309 ctttctaatgcgaactatttttcatctggagagaatacattgtattttaacgatattgaa 1250
Query: 543 gcatcttttcaagccaatgccaaatttgaaaccaatgactt 583
||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1249 gcatcttttcaagccaatgccaaatctgaaaccaatgactt 1209
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7423
Number of Sequences: 1807
Number of extensions: 7423
Number of successful extensions: 36
Number of sequences better than 1.0e-20: 1
length of query: 1018
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1002
effective length of database: 10,329,639
effective search space: 10350298278
effective search space used: 10350298278
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)