BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC5ZB01RM1.SCF screened BAC_end
(874 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1768 1570 0.0
>3x_Contig1768
Length = 25668
Score = 1570 bits (792), Expect = 0.0
Identities = 825/831 (99%), Gaps = 4/831 (0%)
Strand = Plus / Plus
Query: 46 tagggaagacggtatacaattggccagtggtgccaatgataatacagttatgatatggga 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1189 tagggaagacggtatacaattggccagtggtgccaatgataatacagttatgatatggga 1248
Query: 106 tacaaggcaaaataatgatccaatatggactaaaagaaat-acaaagccgcagtcaaggc 164
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1249 tacaaggcaaaataatgatccaatatggactaaaagaaatcacaaagccgcagtcaaggc 1308
Query: 165 tattagttggcatccggaaattaccaatctattagccaccggcggtggttcattagacaa 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1309 tattagttggcatccggaaattaccaatctattagccaccggcggtggttcattagacaa 1368
Query: 225 gcatatacatttctggaatacaactactggtaataggctcggaactatagatacaggctc 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1369 gcatatacatttctggaatacaactactggtaataggctcggaactatagatacaggctc 1428
Query: 285 acaagtgagctcgttgcactggggccaaagttactccaaacattcgggttgtatggatac 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1429 acaagtgagctcgttgcactggggccaaagttactccaaacattcgggttgtatggatac 1488
Query: 345 agaaattgtagccacaggtggtacaccaaataactgcataaccatatacaattacgagac 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1489 agaaattgtagccacaggtggtacaccaaataactgcataaccatatacaattacgagac 1548
Query: 405 aaaattcaaagttgcggaaatacaacaagcgcatgattcacgtattgtttcatcgcaatt 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1549 aaaattcaaagttgcggaaatacaacaagcgcatgattcacgtattgtttcatcgcaatt 1608
Query: 465 atcccctgatggcaccactatagcatctgttggaggagatgagaatctcaagttctatcg 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1609 atcccctgatggcaccactatagcatctgttggaggagatgagaatctcaagttctatcg 1668
Query: 525 agtcttcgaagaaagacgcaaaaggaaatacttggatgatagaactcataggtacacaga 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1669 agtcttcgaagaaagacgcaaaaggaaatacttggatgatagaactcataggtacacaga 1728
Query: 585 caaattagacactaaatcgcatgaaaatgacgaacctcaaagatcaccatccaaaggcac 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1729 caaattagacactaaatcgcatgaaaatgacgaacctcaaagatcaccatccaaaggcac 1788
Query: 645 atacattattaggtagttttccaggaaaaaatgcattcgatataaactctttctttaata 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1789 atacattattaggtagttttccaggaaaaaatgcattcgatataaactctttctttaata 1848
Query: 705 ataattatagtaatgagaaagtaatctctctgacagcaaataatatggcacttgtccttc 764
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1849 ataattatagtaatgagaaagtaatctctctgacagcaaataatatggcacttgtccttc 1908
Query: 765 tatgcagatcagatgaactcatctaaaagcttatttccagggaaatgtgagcaaatccac 824
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 1909 tatgcagatcagatgaactcatctaaaagcttatttcca-ggaaatgtgagcaaatccac 1967
Query: 825 ttagaagg-ataaaaggagaaaaaccca-gctttcagagaanaagtgcgtc 873
|||||||| ||||||||||||||| ||| |||||||||||| |||||||||
Sbjct: 1968 ttagaaggaataaaaggagaaaaaaccaggctttcagagaaaaagtgcgtc 2018
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5635
Number of Sequences: 1807
Number of extensions: 5635
Number of successful extensions: 44
Number of sequences better than 1.0e-20: 1
length of query: 874
length of database: 10,358,551
effective HSP length: 16
effective length of query: 858
effective length of database: 10,329,639
effective search space: 8862830262
effective search space used: 8862830262
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)