BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC5ZB03FM1.SCF screened BAC_end
(1029 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1500 805 0.0
>3x_Contig1500
Length = 9720
Score = 805 bits (406), Expect = 0.0
Identities = 455/470 (96%), Gaps = 1/470 (0%)
Strand = Plus / Plus
Query: 118 tgattcaacttctaaacggtcaaaccgatatatgtctgtaatatactatatatacataat 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8304 tgattcaacttctaaacggtcaaaccgatatatgtctgtaatatactatatatacataat 8363
Query: 178 cagactttaatcatacacaaagcgaaagataaatcacgtgagtaatatatcggtccattg 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8364 cagactttaatcatacacaaagcgaaagataaatcacgtgagtaatatatcggtccattg 8423
Query: 238 cctaggttttttttttttttcgtttaaaaaacgtaatgctgccaatcgtataacgtcgtt 297
|||||||| | || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 8424 cctaggttccctcccttcctcgtttaaaaaacgtaatgctgccaatcgtataacgtcgtt 8483
Query: 298 tacgggatttcgcctcgagggaacgaaaagaatgaaaagcataatacgaagcgaataaaa 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8484 tacgggatttcgcctcgagggaacgaaaagaatgaaaagcataatacgaagcgaataaaa 8543
Query: 358 aaaaacagttaggaaaccccagaaactgccgtaccagaaaggaaactgggtggtgctgaa 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8544 aaaaacagttaggaaaccccagaaactgccgtaccagaaaggaaactgggtggtgctgaa 8603
Query: 418 atgtgcatcaaagcccaactggcgacagaaaaacaggccacaacttgcgaaaagtacgcc 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8604 atgtgcatcaaagcccaactggcgacagaaaaacaggccacaacttgcgaaaagtacgcc 8663
Query: 478 ggaaacactctagaagaaaagagctagtcggatagactatctgtgataacggtatgaacg 537
| |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct: 8664 gtaaacactctagaagaaaagagctagtcgtatagactagctgtgataacggtatgaacg 8723
Query: 538 gcttggttttgcaagccaatgcttatttgatgaaatggacctatgaggct 587
||||||||| ||||||||||||||| |||| |||||||||| ||||||||
Sbjct: 8724 gcttggtttcgcaagccaatgctta-ttgaagaaatggaccgatgaggct 8772
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 15,271
Number of Sequences: 1807
Number of extensions: 15271
Number of successful extensions: 292
Number of sequences better than 1.0e-20: 1
length of query: 1029
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1013
effective length of database: 10,329,639
effective search space: 10463924307
effective search space used: 10463924307
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)