BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC5ZB03RM1.SCF screened BAC_end
(952 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig111 965 0.0
>3x_Contig111
Length = 1001
Score = 965 bits (487), Expect = 0.0
Identities = 530/543 (97%), Gaps = 1/543 (0%)
Strand = Plus / Plus
Query: 139 tttacagcagcagcatcatcatcagatggatatcattgacgattaacttgaaaaaattgt 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 tttacagcagcagcatcatcatcagatggatatcattgacgattaacttgaaaaaattgt 63
Query: 199 gctatacttgactcggattattgctttccacacatgagtactcttcttatccgttaaagc 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 gctatacttgactcggattattgctttccacacatgagtactcttcttatccgttaaagc 123
Query: 259 ctccaccttagtgtctttcagctcattctgggttgaagttttcacaaatgttaatagggt 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 ctccaccttagtgtctttcagctcattctgggttgaagttttcacaaatgttaatagggt 183
Query: 319 agacgctagttaatttcattttcttggagctgatacacgtgactttacagagttaattaa 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 agacgctagttaatttcattttcttggagctgatacacgtgactttacagagttaattaa 243
Query: 379 tttgaatagatactgcatacgtggagtaagcttggttattaacccttctcttcattattt 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 tttgaatagatactgcatacgtggagtaagcttggttattaacccttctcttcattattt 303
Query: 439 ccataaaattatactgctacttctgtcttaccgtcaagcgcattctggctcattgaaggc 498
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 ccataaaattatactgctacttctgtcttaccgtcaagcgcattctggctcattgaaggt 363
Query: 499 atattttagagactgaactttacttcatccgaaagtgcgtattcaatttgtacattctac 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 atattttagagactgaactttacttcatccgaaagtgcgtattcaatttgtacattctac 423
Query: 559 accgcttcatctataag-tttaatgaactttatagttgacgcatgtacattatttttgat 617
|||| |||||||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct: 424 accgtttcatctataagcattaatgaactttatagttgacgcatgttcattatttttgat 483
Query: 618 tttccatccatgagaacatccattaaagaggaccccaatcacctttcattgccctctgct 677
||||||||||||||| ||| |||||||| |||| | |||||||||||||||||||| |
Sbjct: 484 tttccatccatgagacgatctattaaagatgaccgaattcacctttcattgccctctgtt 543
Query: 678 tga 680
|||
Sbjct: 544 tga 546
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6414
Number of Sequences: 1807
Number of extensions: 6414
Number of successful extensions: 35
Number of sequences better than 1.0e-20: 1
length of query: 952
length of database: 10,358,551
effective HSP length: 16
effective length of query: 936
effective length of database: 10,329,639
effective search space: 9668542104
effective search space used: 9668542104
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)