BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC5ZB04RM1.SCF screened BAC_end
(913 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1665 1249 0.0
>3x_Contig1665
Length = 15710
Score = 1249 bits (630), Expect = 0.0
Identities = 662/669 (98%), Gaps = 3/669 (0%)
Strand = Plus / Plus
Query: 48 tcaatgtatccgagtcatcattgttactagaagtcaatttgaaagataattgcaattccc 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8696 tcaatgtatccgagtcatcattgttactagaagtcaatttgaaagataattgcaattccc 8755
Query: 108 caaaattatacggcagtgccttcggatccatccatgacaaattcttctccctcaaaatgt 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8756 caaaattatacggcagtgccttcggatccatccatgacaaattcttctccctcaaaatgt 8815
Query: 168 tcctattgaacataggataccactgtgcatctttagtgaatttaaaatgggttctactag 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8816 tcctattgaacataggataccactgtgcatctttagtgaatttaaaatgggttctactag 8875
Query: 228 tcctgaacaaagttagaattgaaatcttacattctgccaagtataggaaattagtgttat 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8876 tcctgaacaaagttagaattgaaatcttacattctgccaagtataggaaattagtgttat 8935
Query: 288 cagaatcataaataattaaccgtaggtattgagataacggagaattcgatagcttcaatt 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8936 cagaatcataaataattaaccgtaggtattgagataacggagaattcgatagcttcaatt 8995
Query: 348 tcaaagtcgatttccattgtggttgagtgctattctttacttttttagtggtcttggtaa 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8996 tcaaagtcgatttccattgtggttgagtgctattctttacttttttagtggtcttggtaa 9055
Query: 408 cgttattgaacgttaccaagcacaatggattgcaaacagcttcatttatcgtgaaattcc 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9056 cgttattgaacgttaccaagcacaatggattgcaaacagcttcatttatcgtgaaattcc 9115
Query: 468 gagcttgatgcacttgaacttgtaaagttaatgaattgcgggaatggttaacatccaata 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9116 gagcttgatgcacttgaacttgtaaagttaatgaattgcgggaatggttaacatccaata 9175
Query: 528 cttcatctttcccccttttcctacggagcaaacgaggcatagcgtatggtttccggaacc 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9176 cttcatctttcccccttttcctacggagcaaacgaggcatagcgtatggtttccggaacc 9235
Query: 588 attcgcgttatcgatatcggaaacccctgcgtntaaaagctgctgttaaaaatatacgtc 647
|||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct: 9236 attcgcgttatcgatatcggaaaccctggcgtttaaaagctgctgttaaaaatatacgtc 9295
Query: 648 tttaaccgtactaggaaatcagttgggtagaaaccacaaattcgagcgttccttatgaaa 707
|||||||||||||| ||||||||| |||||||||||| |||||||||| |||||||||||
Sbjct: 9296 tttaaccgtactagaaaatcagtt-ggtagaaaccac-aattcgagcg-tccttatgaaa 9352
Query: 708 agacgtgaa 716
|||||||||
Sbjct: 9353 agacgtgaa 9361
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7413
Number of Sequences: 1807
Number of extensions: 7413
Number of successful extensions: 40
Number of sequences better than 1.0e-20: 1
length of query: 913
length of database: 10,358,551
effective HSP length: 16
effective length of query: 897
effective length of database: 10,329,639
effective search space: 9265686183
effective search space used: 9265686183
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)