BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC5ZB05FM1.SCF screened BAC_end
(935 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1567 1007 0.0
>3x_Contig1567
Length = 11673
Score = 1007 bits (508), Expect = 0.0
Identities = 568/586 (96%), Gaps = 2/586 (0%)
Strand = Plus / Minus
Query: 93 gcctagatttgggtacagacatttctcaaaatatgaaaatatgagtgataactgatggaa 152
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7717 gcctagatttgggtacagacatttctcaaaatatgaaaatatgagtgataactgatggaa 7658
Query: 153 caacccgcaaactagttcgttgagagttaaagcacacctaagacctatttattggtactt 212
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 7657 caacccgcaaactagttcgctgagagttaaagcacacctaagacctatttattggtactt 7598
Query: 213 tcacttacttcnnttgcagcaggtttctattttatgcaagctcagttttttttcgaatgt 272
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7597 tcacttactacttctgcagcaggtttctattttatgcaagctcagttttttttcgaatgt 7538
Query: 273 tccaatgttcaaattttcattatcaggaaattatcaccatgatgaggataagagcgatga 332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7537 tccaatgttcaaattttcattatcaggaaattatcaccatgatgaggataagagcgatga 7478
Query: 333 gagatgcgagaagggtcacattgccatactgggtactgaagcaccattgaaggggaaata 392
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7477 gagatgcgagaagggtcacattgccatactgggtactgaagcaccattgaaggggaaata 7418
Query: 393 ttcagttggcacgttcaatcaattaaataatattcaattctttgtataattatcgggtac 452
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7417 ttcagttggcacgttcaatcaattaaataatattcaattctttgtataattatcgggtac 7358
Query: 453 tagcctggatcaataatgatattaaaattatacacgatgtggagttttaaaaactagtaa 512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7357 tagcctggatcaataatgatattaaaattatacacgatgtggagttttaaaaactagtaa 7298
Query: 513 aaatagttaaaaatatgagcggatggttgagagttgttgcatgaaact-ttataataaca 571
||||||||||||||||||||||||||||||||||||||||||||| || | |||||||||
Sbjct: 7297 aaatagttaaaaatatgagcggatggttgagagttgttgcatgaagctataataataaca 7238
Query: 572 atgatagtatgctaagcattgaatctatattatatgatgattaatttaaacaaaaaaaag 631
|||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||
Sbjct: 7237 atgatagtatgctaagcattgaatctatattatagaatgatgaa-ttaaacaaaaaaaaa 7179
Query: 632 gtgggaataactttccagaattcagttaaagaattcttgaagttta 677
| |||||||||| | |||||||||||||||||||||||||||||
Sbjct: 7178 ggtggaataacttccaggaattcagttaaagaattcttgaagttta 7133
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 21,161
Number of Sequences: 1807
Number of extensions: 21161
Number of successful extensions: 148
Number of sequences better than 1.0e-20: 1
length of query: 935
length of database: 10,358,551
effective HSP length: 16
effective length of query: 919
effective length of database: 10,329,639
effective search space: 9492938241
effective search space used: 9492938241
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)