BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC5ZB06FM1.SCF screened BAC_end
(1187 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1475 406 e-113
>3x_Contig1475
Length = 10676
Score = 406 bits (205), Expect = e-113
Identities = 247/257 (96%), Gaps = 3/257 (1%)
Strand = Plus / Minus
Query: 274 gaaattcatttaattcctaaattctcaccataccaatatatacatgatgatgaagaagat 333
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 9739 gaaattcatttaattcctaaattctcaccataccaatataaacatgatgatgaagaagat 9680
Query: 334 gttggcattatcccagacttcaaatccaagtatttggctggtgaattgggtccacttaat 393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9679 gttggcattatcccagacttcaaatccaagtatttggctggtgaattgggtccacttaat 9620
Query: 394 gtttctctatttgaccaatggctctacactgctactttagctatacatcgccacagtgtt 453
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 9619 gtttctctatttgaccaatggctctacactgctactttagcta-acatcgccacagtgtt 9561
Query: 454 ccaagactttgaaactcaagattggtaggcacactttgacccttactgaaatttctatct 513
|||||||| |||||||||||||||| |||||||| |||||| ||||||||| |||||
Sbjct: 9560 ccaagactctgaaactcaagattggaaggcacacggtgaccc-tactgaaatcgctatc- 9503
Query: 514 caagtctttgcaactag 530
|||||||||||||||||
Sbjct: 9502 caagtctttgcaactag 9486
Score = 254 bits (128), Expect = 4e-67
Identities = 128/128 (100%)
Strand = Plus / Minus
Query: 133 taggcgctgtcaacgatatctgttccgataagacaggtactttgacacaaggtaaaatga 192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9879 taggcgctgtcaacgatatctgttccgataagacaggtactttgacacaaggtaaaatga 9820
Query: 193 tcgctaaacaagtttggattccacaatttggtactattactgtccaagaatccaatgagc 252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9819 tcgctaaacaagtttggattccacaatttggtactattactgtccaagaatccaatgagc 9760
Query: 253 ctttcaat 260
||||||||
Sbjct: 9759 ctttcaat 9752
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 16,988
Number of Sequences: 1807
Number of extensions: 16988
Number of successful extensions: 455
Number of sequences better than 1.0e-20: 1
length of query: 1187
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1171
effective length of database: 10,329,639
effective search space: 12096007269
effective search space used: 12096007269
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)