BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC5ZB06RM1.SCF screened BAC_end
(1146 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1375 642 0.0
>3x_Contig1375
Length = 6996
Score = 642 bits (324), Expect = 0.0
Identities = 393/404 (97%), Gaps = 9/404 (2%)
Strand = Plus / Plus
Query: 77 cttgcctacttactgccatatcttatttccgtatacctaagtccgtnttcccactttgtc 136
||||||||||||||||||||||| |||||||||||| ||||||||| ||||||||| |||
Sbjct: 69 cttgcctacttactgccatatct-atttccgtatac-taagtccgt-ttcccactt-gtc 124
Query: 137 gtaacaagggcttgctccccgaattcgtcgatgaatacactcttctatacctacctatct 196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 gtaacaagggcttgctccccgaattcgtcgatgaatacactcttctatacctacctatct 184
Query: 197 tacagaacatctacgctacgtcattttctgaatctcacttcaccatatttctactttttt 256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 tacagaacatctacgctacgtcattttctgaatctcacttcaccatatttctactttttt 244
Query: 257 tttttccttatcgcaagaaatgatttgattcgagaggaaccacaggacatatggcgacga 316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 tttttccttatcgcaagaaatgatttgattcgagaggaaccacaggacatatggcgacga 304
Query: 317 aaatgcttgaaaagtttggcttgatcgttatcaggtaggaacagatcaggcgtagaatca 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 aaatgcttgaaaagtttggcttgatcgttatcaggtaggaacagatcaggcgtagaatca 364
Query: 377 attgtagtggtaacctccctttgattatggtttttactacaaacgtaccagtttgaactg 436
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct: 365 attgtagtggtaacctccctttgattatggcttttactacaaacgtaccag-ttgaactg 423
Query: 437 tttgaacctttccctcacgtgcaaaactaggcacgttaatggca 480
||||| |||||||||| | ||||||||||| ||||||||||||
Sbjct: 424 -ttgaa-ctttccctca-gggcaaaactagg-acgttaatggca 463
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,621
Number of Sequences: 1807
Number of extensions: 14621
Number of successful extensions: 107
Number of sequences better than 1.0e-20: 1
length of query: 1146
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1130
effective length of database: 10,329,639
effective search space: 11672492070
effective search space used: 11672492070
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)