BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC5ZB08RM1.SCF screened BAC_end
(934 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1605 1126 0.0
>3x_Contig1605
Length = 12373
Score = 1126 bits (568), Expect = 0.0
Identities = 665/688 (96%), Gaps = 7/688 (1%)
Strand = Plus / Plus
Query: 46 cttcgattactaggatcatatcttagaaagtctccattaacatcgactgtttcggagcct 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9339 cttcgattactaggatcatatcttagaaagtctccattaacatcgactgtttcggagcct 9398
Query: 106 ggaatcaagatatcaccaaaacagtttaccttctcagttagagtgcgagataaagaccgt 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9399 ggaatcaagatatcaccaaaacagtttaccttctcagttagagtgcgagataaagaccgt 9458
Query: 166 ccttccaaaataagcacaactaaaataaatgaacctgcctctaagttggaaaacacttca 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9459 ccttccaaaataagcacaactaaaataaatgaacctgcctctaagttggaaaacacttca 9518
Query: 226 accgtggtgcataatgaatatttgaattcattgcagctaccgtatcttgcacgaacatcg 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9519 accgtggtgcataatgaatatttgaattcattgcagctaccgtatcttgcacgaacatcg 9578
Query: 286 ttgcgagttagcaaatatgactataaacgagccgctcaattttccaacacactaaaaaga 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9579 ttgcgagttagcaaatatgactataaacgagccgctcaattttccaacacactaaaaaga 9638
Query: 346 actttgaaaactcaagacgcacacgaaagaatattctccatatccagtgaagatgttgct 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9639 actttgaaaactcaagacgcacacgaaagaatattctccatatccagtgaagatgttgct 9698
Query: 406 aaacttatttctagtctttttcaagtctctgaggataatgtttctcttgtcgctaaaaag 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9699 aaacttatttctagtctttttcaagtctctgaggataatgtttctcttgtcgctaaaaag 9758
Query: 466 cgtttctttgaaagggaatgtttcactgaaattcccaaaataacagaaagagtactaagc 525
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 9759 cgtttctttgaaagggaatgtttcactgaaattcccaaaataacagaagaagtactaagc 9818
Query: 526 gatattcaagagttcgaagactatattggacttttgacgcacaccaaatttcatcacaaa 585
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 9819 gatattcaagagttcgaagactatattggacttttgacgcacaccaaattccatcacaaa 9878
Query: 586 ggggtatttttacaagacggaataatacccgaaactttttaaaaattttcttacttcctt 645
||| || ||||||||||||||||||| ||||||||| |||| ||||| | ||| ||| |
Sbjct: 9879 gggtcatctttacaagacggaataata-ccgaaacttcttaagaatttgc-tacatcc-t 9935
Query: 646 tttattttacgaattgcgccattgaaaaacggtttcagtgttcaaccgatgtaatttttc 705
| || ||||||||||||||||||| ||||||| |||||||||||| |||||||| | | |
Sbjct: 9936 tctaatttacgaattgcgccattg-aaaacggcttcagtgttcaa-cgatgtaa-tatac 9992
Query: 706 tactacgggaaccaagaacaattttgcc 733
|||||| |||| ||||||||||||||||
Sbjct: 9993 tactac-ggaaacaagaacaattttgcc 10019
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8026
Number of Sequences: 1807
Number of extensions: 8026
Number of successful extensions: 66
Number of sequences better than 1.0e-20: 1
length of query: 934
length of database: 10,358,551
effective HSP length: 16
effective length of query: 918
effective length of database: 10,329,639
effective search space: 9482608602
effective search space used: 9482608602
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)