BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC5ZB09FM1.SCF screened BAC_end
(1157 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1330 422 e-118
>3x_Contig1330
Length = 7703
Score = 422 bits (213), Expect = e-118
Identities = 248/257 (96%), Gaps = 2/257 (0%)
Strand = Plus / Minus
Query: 123 cctatattgttaatgatgactattcagtttacctttgttagattagtttaaggtaggttt 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 cctatattgttaatgatgactattcagtttacctttgttagattagtttaaggtaggttt 653
Query: 183 ttgttggatttgatccaatctcatcactatagaataatatcgtcagttcttgaacaggga 242
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 ttgttggatttgatccaaactcatcactatagaataatatcgtcagttcttgaacaggga 593
Query: 243 atcatttttttttatcttatatacttccagttggttttaactttaacgtcgtctgagcat 302
|||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 atcacttttttttatcttttatacttccagttggttttaactttaacgtcgtctgagcat 533
Query: 303 ttgtcaatgatgaaactcgatgagattatacagaccttaaggcagggcgaaacatgttga 362
||||||||||||||||||||||||||||| |||| |||||||||| ||||||||||||
Sbjct: 532 ctgtcaatgatgaaactcgatgagattatagagactctaaggcaggg-gaaacatgttga 474
Query: 363 cgagggattcgatatac 379
||| |||||||||||||
Sbjct: 473 cga-ggattcgatatac 458
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7899
Number of Sequences: 1807
Number of extensions: 7899
Number of successful extensions: 59
Number of sequences better than 1.0e-20: 1
length of query: 1157
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1141
effective length of database: 10,329,639
effective search space: 11786118099
effective search space used: 11786118099
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)