BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC5ZB09RM1.SCF screened BAC_end
         (1137 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1728                                                         686   0.0  

>3x_Contig1728 
          Length = 20685

 Score =  686 bits (346), Expect = 0.0
 Identities = 377/382 (98%), Gaps = 4/382 (1%)
 Strand = Plus / Minus

                                                                        
Query: 86   gcacccaattgaatcagttgagccactgagctccgtaggatagtaagctgtaaatgtcca 145
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1373 gcacccaattgaatcagttgagccactgagctccgtaggatagtaagctgtaaatgtcca 1314

                                                                        
Query: 146  ccgtagatatctggcaacaaaaaagcggtcctatcgtcttcaaaaaacataacgtatttc 205
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1313 ccgtagatatctggcaacaaaaaagcggtcctatcgtcttcaaaaaacataacgtatttc 1254

                                                                        
Query: 206  catttcgaatcttttggtaatcggaaaatatcacgaagttcagtggttttagatttctct 265
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1253 catttcgaatcttttggtaatcggaaaatatcacgaagttcagtggttttagatttctct 1194

                                                                        
Query: 266  ttgtccctagagagccactgctgatgtaattcttcaatagccttggttaagtcatgactc 325
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1193 ttgtccctagagagccactgctgatgtaattcttcaatagccttggttaagtcatgactc 1134

                                                                        
Query: 326  aacggcctattctggtcatcaaaccagatacctcttcgtatttcataggatggtccgccc 385
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 1133 aacggcctattctggtcatcaaaccagatacctcttcgtatttcataggatggtccgtcc 1074

                                                                        
Query: 386  caatagattggattcatagaaaacttttcccagatcaaccctcgaaaagatgatccctca 445
            |||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |||||
Sbjct: 1073 caatagattggattcatagaaaactttt-ccagatcaa-cctcgaaaagatgat-cctca 1017

                                  
Query: 446  ttaacatccaagtttcctactg 467
            ||||||| ||||||||||||||
Sbjct: 1016 ttaacat-caagtttcctactg 996


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 16,865
Number of Sequences: 1807
Number of extensions: 16865
Number of successful extensions: 123
Number of sequences better than 1.0e-20: 1
length of query: 1137
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1121
effective length of database: 10,329,639
effective search space: 11579525319
effective search space used: 11579525319
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)