BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC5ZB10RM1.SCF screened BAC_end
(956 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1438 1017 0.0
>3x_Contig1438
Length = 9247
Score = 1017 bits (513), Expect = 0.0
Identities = 536/541 (99%), Gaps = 2/541 (0%)
Strand = Plus / Minus
Query: 49 cgccacaagtaagtaaacattgtgcagaagaactgttatttataattgtctctcttttca 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6066 cgccacaagtaagtaaacattgtgcagaagaactgttatttataattgtctctcttttca 6007
Query: 109 cttctattaaacaaaaagagatatcccacgcagttgataagccaaaagtccagttaaaca 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6006 cttctattaaacaaaaagagatatcccacgcagttgataagccaaaagtccagttaaaca 5947
Query: 169 aaaattgtgaaccacaatggaatgactagactccaggtaggaaacaacaacccagatcaa 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5946 aaaattgtgaaccacaatggaatgactagactccaggtaggaaacaacaacccagatcaa 5887
Query: 229 ctaatcaatggttcaagataatccttgcaacctttactcttttaaatgtcaaaaattaac 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5886 ctaatcaatggttcaagataatccttgcaacctttactcttttaaatgtcaaaaattaac 5827
Query: 289 attaacaaaagtagtattccaatttttcaatttaaaaatgaaaacaattttttcgagttc 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5826 attaacaaaagtagtattccaatttttcaatttaaaaatgaaaacaattttttcgagttc 5767
Query: 349 tagaatgcgccaataaaatgaaagtcgaaaatacaaactcgcgcagaatatatacgcaat 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5766 tagaatgcgccaataaaatgaaagtcgaaaatacaaactcgcgcagaatatatacgcaat 5707
Query: 409 ggcgaaacaattgggaatcgtcaagccgttgaagttgtgtctggggtcctataccaattg 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5706 ggcgaaacaattgggaatcgtcaagccgttgaagttgtgtctggggtcctataccaattg 5647
Query: 469 agtgaccaagagagcgttatttttcatgtgtaatttttcctctttattttaaactatttg 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5646 agtgaccaagagagcgttatttttcatgtgtaatttttcctctttattttaaactatttg 5587
Query: 529 aatacgtaaaggatgaaagtaaatttgatcacgtgtaacatgattaccccggagatgtgc 588
||||||||||| ||| |||| || |||||||||||||||||||||| |||||||||||||
Sbjct: 5586 aatacgtaaagaatg-aagttaagttgatcacgtgtaacatgatta-cccggagatgtgc 5529
Query: 589 c 589
|
Sbjct: 5528 c 5528
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9500
Number of Sequences: 1807
Number of extensions: 9500
Number of successful extensions: 70
Number of sequences better than 1.0e-20: 1
length of query: 956
length of database: 10,358,551
effective HSP length: 16
effective length of query: 940
effective length of database: 10,329,639
effective search space: 9709860660
effective search space used: 9709860660
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)