BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC5ZB11FM1.SCF screened BAC_end
(931 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1519 1298 0.0
>3x_Contig1519
Length = 9351
Score = 1298 bits (655), Expect = 0.0
Identities = 728/748 (97%), Gaps = 5/748 (0%)
Strand = Plus / Plus
Query: 87 tacgcatatttgtcatttaaggatatatgattcagcctttgaatctaatcattgaaactt 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4792 tacgcatatttgtcatttaaggatatatgattcagcctttgaatctaatcattgaaactt 4851
Query: 147 tcagtcattgcaatcgagaaacgctttgaaatagctttcaggactgaatagtcatttttt 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4852 tcagtcattgcaatcgagaaacgctttgaaatagctttcaggactgaatagtcatttttt 4911
Query: 207 aggtgcgttttgttgnngttttttactcatatcaacgcttcaattttacattcgctgttc 266
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4912 aggtgcgttttgttgttgttttttactcatatcaacgcttcaattttacattcgctgttc 4971
Query: 267 tttgatagataaatacacgggtccgcgttgatcataggccggtaacaacttctaacatac 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4972 tttgatagataaatacacgggtccgcgttgatcataggccggtaacaacttctaacatac 5031
Query: 327 ggtataacaagttactaaaaagatggcaggtgaattagatgctgatagtaatagtagagc 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5032 ggtataacaagttactaaaaagatggcaggtgaattagatgctgatagtaatagtagagc 5091
Query: 387 gtcaggtatcaccatccccgctaacggtcagagacgaagacaatcaataatgatgctgtc 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5092 gtcaggtatcaccatccccgctaacggtcagagacgaagacaatcaataatgatgctgtc 5151
Query: 447 agaaagtgtgaaaagtcggaggtctttgaagagtcattcgagggtgatacctgctgctgc 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5152 agaaagtgtgaaaagtcggaggtctttgaagagtcattcgagggtgatacctgctgctgc 5211
Query: 507 cacaccacctctgggaaagagtattgaatctaatgcattgattgatgtcggatcacccag 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5212 cacaccacctctgggaaagagtattgaatctaatgcattgattgatgtcggatcacccag 5271
Query: 567 tttcaaatctccaaatttggagcatgaagctgaaataattcaatctttgaaacagaatta 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5272 tttcaaatctccaaatttggagcatgaagctgaaataattcaatctttgaaacagaatta 5331
Query: 627 tttgagagataacattaacaagtcaagctcattctcacaactaagcagaaaattacattc 686
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 5332 tttgagagataacattaacaagtcaagctcattctcacaactaagcaaaaaatcacattc 5391
Query: 687 atcaaccttacaagacagcgatgctccgagtgagactgcaatagccatt-cagagcatga 745
||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct: 5392 atcaaccttacaagacagcgatgctccgagtgagactgcaataagcattccagagcatga 5451
Query: 746 ctttaattttaatacaagaaggcggggatatattaaaaagatttgtataaggtaattttt 805
|| |||| ||||||| ||||||||| |||||||| || ||||||||||||| || | ||
Sbjct: 5452 ctctaatcttaatac-agaaggcggtgatatatt-aagagatttgtataagtta--tctt 5507
Query: 806 aaaatcttgacaattatgtggaaaaaaa 833
||||||||||||| ||||| |||||||
Sbjct: 5508 caaatcttgacaataatgtgaaaaaaaa 5535
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6911
Number of Sequences: 1807
Number of extensions: 6911
Number of successful extensions: 35
Number of sequences better than 1.0e-20: 1
length of query: 931
length of database: 10,358,551
effective HSP length: 16
effective length of query: 915
effective length of database: 10,329,639
effective search space: 9451619685
effective search space used: 9451619685
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)