BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC5ZB12FM1.SCF screened BAC_end
(1031 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1704 601 e-171
>3x_Contig1704
Length = 14855
Score = 601 bits (303), Expect = e-171
Identities = 340/351 (96%), Gaps = 1/351 (0%)
Strand = Plus / Plus
Query: 265 acagagatatatgattcttttatacccgaaactattgctactgaatccgttgaaatgtca 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8641 acagagatatatgattcttttatacccgaaactattgctactgaatccgttgaaatgtca 8700
Query: 325 gaatgtaatatgaatttggcaactattcattcagagtttgggaaaaaatggtctcatctc 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8701 gaatgtaatatgaatttggcaactattcattcagagtttgggaaaaaatggtctcatctc 8760
Query: 385 tcattcaatgtggtagagattgacatttgccagctcactggcgatctattaattactaga 444
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 8761 tcattcaatgtggtagagattgacatttgccagctcactggtgatctattaattactaga 8820
Query: 445 ttcgatacagtacgcaacaaacaccttcatttacgtttacctttgaatcgttataatttc 504
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct: 8821 ttcgatacagtacgcaacaaacaccttcatttacgtttacctttgaatcgtcataattcc 8880
Query: 505 agagacctttcggaagatgttttgggttttgaagccctcctcgatgagttaaaccatatc 564
||||||||||||||||| || ||||||||||||||| ||||||||||||||||||||||
Sbjct: 8881 agagacctttcggaagaggtcttgggttttgaagccgccctcgatgagttaaaccatatc 8940
Query: 565 atttctttcaacaaatgttccacttcaattgaagttaccctcggtcattac 615
||||||| |||||| ||| |||||||||||||||||| |||||||||||||
Sbjct: 8941 atttcttccaacaattgtaccacttcaattgaagtta-cctcggtcattac 8990
Score = 216 bits (109), Expect = 7e-56
Identities = 125/129 (96%), Gaps = 1/129 (0%)
Strand = Plus / Plus
Query: 125 acattcattgacattgtcactattcttcaacatgagtaccaaaacaaggctggaaagcca 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8502 acattcattgacattgtcactattcttcaacatgagtaccaaaacaaggctggaaagcca 8561
Query: 185 acttgggcagaatttcaggttacttttatcacccaagatcattgtcattactatatgaaa 244
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 8562 acttgggcagaatttcaggttac-gagatcacccaagatcattgtcattactatatgaaa 8620
Query: 245 aagctttct 253
|||||||||
Sbjct: 8621 aagctttct 8629
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,036
Number of Sequences: 1807
Number of extensions: 11036
Number of successful extensions: 113
Number of sequences better than 1.0e-20: 1
length of query: 1031
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1015
effective length of database: 10,329,639
effective search space: 10484583585
effective search space used: 10484583585
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)