BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC5ZB12RM1.SCF screened BAC_end
(1158 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig727 549 e-156
3x_Contig1696 190 4e-48
3x_Contig939 135 2e-31
3x_Contig354 135 2e-31
>3x_Contig727
Length = 2486
Score = 549 bits (277), Expect = e-156
Identities = 322/335 (96%), Gaps = 2/335 (0%)
Strand = Plus / Minus
Query: 77 cttccaaaggcattcccatgttttcttctattatggccatgctcgngggtaaagcatatt 136
||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct: 1521 cttccaaaggcattcccatgttt-cttctattatggccatgctcgtgggtaaagcatatt 1463
Query: 137 taccagaacctattgtgtcatctgtggccccttttacatgacaaaagtaagtcgggtata 196
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 1462 taccagaacctattgtgtcatctgtggccccttttacatgacaaaagtaagtcggttata 1403
Query: 197 ttctattcttgtcgnaaatgtttcaagaatgaagcgggggctcaatggtatattttttta 256
|||||||||||||| |||||||||||||||||||||| |||||||||||| | ||| |
Sbjct: 1402 ttctattcttgtcgtaaatgtttcaagaatgaagcggtggctcaatggtagagctttcga 1343
Query: 257 ctccagttaaattctgggaattttccaaggaaacaaaattgcaatcgaagggttgcaggt 316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1342 ctccagttaaattctgggaattttccaaggaaacaaaattgcaatcgaagggttgcaggt 1283
Query: 317 tcaattcctgtgcgtttcattttttaacatttttgcatagctagtcacatgactactttt 376
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1282 tcaattcctgtccgtttcattttttaacatttttgcatagctagtcacatgactactttt 1223
Query: 377 gccacgtggattatgatttgcgtccaataaactct 411
||||||||||||||||||| ||||||||||||||
Sbjct: 1222 gccacgtggattatgattt-tgtccaataaactct 1189
>3x_Contig1696
Length = 16725
Score = 190 bits (96), Expect = 4e-48
Identities = 117/124 (94%)
Strand = Plus / Minus
Query: 218 ttcaagaatgaagcgggggctcaatggtatatttttttactccagttaaattctgggaat 277
|||||||||||||||| |||||||||||| | ||| ||||||||||||||||||||||
Sbjct: 828 ttcaagaatgaagcggtggctcaatggtagagctttcgactccagttaaattctgggaat 769
Query: 278 tttccaaggaaacaaaattgcaatcgaagggttgcaggttcaattcctgtgcgtttcatt 337
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 768 tttccaaggaaacaaaattgcaatcgaagggttgcaggttcaattcctgtccgtttcatt 709
Query: 338 tttt 341
||||
Sbjct: 708 tttt 705
>3x_Contig939
Length = 3877
Score = 135 bits (68), Expect = 2e-31
Identities = 105/116 (90%), Gaps = 1/116 (0%)
Strand = Plus / Plus
Query: 225 atgaagcgggggctcaatggtatatttttttactccagttaaattctgggaattttccaa 284
||||||||| |||||||||||| | ||| ||||||||||||| |||| ||||||| |
Sbjct: 2792 atgaagcggtggctcaatggtagagctttcgactccagttaaatcctgg-aattttctga 2850
Query: 285 ggaaacaaaattgcaatcgaagggttgcaggttcaattcctgtgcgtttcattttt 340
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 2851 ggaaacaaaattgcaatcgaagggttgcaggttcaattcctgtccgtttcattttt 2906
>3x_Contig354
Length = 1443
Score = 135 bits (68), Expect = 2e-31
Identities = 108/120 (90%), Gaps = 1/120 (0%)
Strand = Plus / Plus
Query: 221 aagaatgaagcgggggctcaatggtatatttttttactccagttaaattctgggaatttt 280
||||||||||||| |||||||||||| | ||| ||||||||||||| |||| |||||
Sbjct: 958 aagaatgaagcggtggctcaatggtagagctttcgactccagttaaatcctggaaattt- 1016
Query: 281 ccaaggaaacaaaattgcaatcgaagggttgcaggttcaattcctgtgcgtttcattttt 340
| | ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1017 ctatggaaacaaaattgcaatcgaagggttgcaggttcaattcctgtccgtttcattttt 1076
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,519
Number of Sequences: 1807
Number of extensions: 11519
Number of successful extensions: 127
Number of sequences better than 1.0e-20: 4
length of query: 1158
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1142
effective length of database: 10,329,639
effective search space: 11796447738
effective search space used: 11796447738
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)