BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC5ZC01FM1.SCF screened BAC_end
(898 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1610 1187 0.0
>3x_Contig1610
Length = 13981
Score = 1187 bits (599), Expect = 0.0
Identities = 659/671 (98%), Gaps = 6/671 (0%)
Strand = Plus / Plus
Query: 87 caaagaatttctttccttcacatctatttatcaaacaaaaacaactagaaaacatttcgt 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3281 caaagaatttctttccttcacatctatttatcaaacaaaaacaactagaaaacatttcgt 3340
Query: 147 aaacaaaagaacttaggatccaagaaacagggaaacatttcactttgtatccttgcgttt 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3341 aaacaaaagaacttaggatccaagaaacagggaaacatttcactttgtatccttgcgttt 3400
Query: 207 aggtgtcttgtgcaagggagaacggttcgtgagacacttgatcgagagttcatactcaga 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3401 aggtgtcttgtgcaagggagaacggttcgtgagacacttgatcgagagttcatactcaga 3460
Query: 267 aactcgttagtaggcgccgaataattacagaataaaggaagatctaacgtcgctattcga 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3461 aactcgttagtaggcgccgaataattacagaataaaggaagatctaacgtcgctattcga 3520
Query: 327 tatactgatacttttataaagtgaaccaagtgtgaaaatttattatttgccgtttgctgt 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3521 tatactgatacttttataaagtgaaccaagtgtgaaaatttattatttgccgtttgctgt 3580
Query: 387 tgcagttccttgttttatttctataattttggagactgactattgaaacgacccgctagg 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3581 tgcagttccttgttttatttctataattttggagactgactattgaaacgacccgctagg 3640
Query: 447 atttggaaacactagtaagttataataccctttacaaatcgttatgtcagcttccgaggt 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3641 atttggaaacactagtaagttataataccctttacaaatcgttatgtcagcttccgaggt 3700
Query: 507 tgcccagtttttggaaaacattatcattactccggacccaacggtccgtcttcaagcgga 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3701 tgcccagtttttggaaaacattatcattactccggacccaacggtccgtcttcaagcgga 3760
Query: 567 gacgacgtttgagaaattatctaacgataatttctttgcaattcgctggacttttgtctc 626
||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 3761 gacgacgttgaagaaattatctaacgataatttc-ttgcaattcgctggacttttgtctc 3819
Query: 627 agatcttggccgatgtgttcgttcgtcttgaagcctagaa-tctagcaggtttgacgttt 685
|||||||||||||||||| |||||||||||||| |||||| |||||||||||||||| ||
Sbjct: 3820 agatcttggccgatgtgtccgttcgtcttgaag-ctagaattctagcaggtttgacg-tt 3877
Query: 686 gaagaacaaattgatttcgaaggaacccaacaaaggcccaacagtttgctcaacgtttgg 745
||||||| ||||||||||||| |||||||||||||||||| |||||||||||||| ||||
Sbjct: 3878 gaagaacgaattgatttcgaa-gaacccaacaaaggcccagcagtttgctcaacg-ttgg 3935
Query: 746 tctacccaagt 756
||||| |||||
Sbjct: 3936 tctacgcaagt 3946
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7205
Number of Sequences: 1807
Number of extensions: 7205
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 898
length of database: 10,358,551
effective HSP length: 16
effective length of query: 882
effective length of database: 10,329,639
effective search space: 9110741598
effective search space used: 9110741598
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)