BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC5ZC01RM1.SCF screened BAC_end
(870 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1088 916 0.0
>3x_Contig1088
Length = 4585
Score = 916 bits (462), Expect = 0.0
Identities = 484/490 (98%), Gaps = 1/490 (0%)
Strand = Plus / Plus
Query: 46 ttgttctgattcttgaggtgttagaccgcactttatgatcaagtaccagaagactgtatt 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3068 ttgttctgattcttgaggtgttagaccgcactttatgatcaagtaccagaagactgtatt 3127
Query: 106 gtacaagttattgatatgtgtatcaacaaatctccacgaaagataatcttttaccacagt 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3128 gtacaagttattgatatgtgtatcaacaaatctccacgaaagataatcttttaccacagt 3187
Query: 166 gaggtttggataacaaacacaacgggaatcaaagtatggcaaatgtttatgatgtaggac 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3188 gaggtttggataacaaacacaacgggaatcaaagtatggcaaatgtttatgatgtaggac 3247
Query: 226 gacatcggggaaaaataggttccaaagagagacataattagctgtgaacaacgatacgaa 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3248 gacatcggggaaaaataggttccaaagagagacataattagctgtgaacaacgatacgaa 3307
Query: 286 cagggtactgatcttatcacgtcttctattaaaaagttttgtatctctcttcaaaatgaa 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3308 cagggtactgatcttatcacgtcttctattaaaaagttttgtatctctcttcaaaatgaa 3367
Query: 346 tgagtattcatcgctttcaccatacgcacaaatcatttcttgtttatactgcatgaacac 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3368 tgagtattcatcgctttcaccatacgcacaaatcatttcttgtttatactgcatgaacac 3427
Query: 406 atttttagcagcagcgttcattagtttcaatgccctctcatcatttggtttagcgaaatt 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3428 atttttagcagcagcgttcattagtttcaatgccctctcatcatttggtttagcgaaatt 3487
Query: 466 atagtattttgagaattcatggaatttcttcccatcaactcttaccactatgtatgtatc 525
||||||||||| | |||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 3488 atagtattttgcgcattcatggaatttcttcccatcaactcttaaaaatatgtatgtatc 3547
Query: 526 -cggaagcaa 534
|||||||||
Sbjct: 3548 gcggaagcaa 3557
Score = 519 bits (262), Expect = e-147
Identities = 312/322 (96%), Gaps = 5/322 (1%)
Strand = Plus / Plus
Query: 549 caaattgc-cttacgtattcaaatcttga-ctttgc-catctatagatcaaatagcgtcc 605
|||||||| |||||||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct: 3578 caaattgcgcttacgtattcaaatcttgagctttgcgcatctatagatcaaatagcgtcc 3637
Query: 606 tgacacagattagtgctttcttaagtgtttcactatt-ctcaaccgagatgaagtgagta 664
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 3638 tgacacagattagtgctttcttaagtgtttcactattgctcaaccgagatgaagtgagta 3697
Query: 665 agagaaactgaaatgtccaactgctcaaatcataaaagatcctaagtttgaatcaaacga 724
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3698 agagaaactgaaatgtccaactgctcaaatcataaaagatcctaagtttgaatcaaacga 3757
Query: 725 ggaaaaatcgcgtgctacagatattcaaaagtctattaaaactaaagtcaaacaagatcc 784
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 3758 ggaaaaatcgcgtgctacagatattcaaaagtctattaaaactaagtacaaacaagatcc 3817
Query: 785 atttgatcaaatactaatatcccttcactcaagacttacagcaactatctatggattaat 844
||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |
Sbjct: 3818 atttgatcaaatactaatatccc-tcactcaagacttacagcaactatctatgtattatt 3876
Query: 845 ttatttacatcttgtgaagttt 866
||||||||||||||||||||||
Sbjct: 3877 ttatttacatcttgtgaagttt 3898
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6616
Number of Sequences: 1807
Number of extensions: 6616
Number of successful extensions: 39
Number of sequences better than 1.0e-20: 1
length of query: 870
length of database: 10,358,551
effective HSP length: 16
effective length of query: 854
effective length of database: 10,329,639
effective search space: 8821511706
effective search space used: 8821511706
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)