BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC5ZC02FM1.SCF screened BAC_end
(951 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1435 706 0.0
>3x_Contig1435
Length = 8899
Score = 706 bits (356), Expect = 0.0
Identities = 402/416 (96%), Gaps = 1/416 (0%)
Strand = Plus / Plus
Query: 91 aatacatcagcattttctctcaaccaacagccttcagcagacaacgcgacagagaagcag 150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2877 aatacatcagcattttctctcaaccaacagccttcagcagacaacgcgacagagaagcag 2936
Query: 151 gaagccaaaaatgccgtcagtattgttgtaaaacctgcattctcctttggtagcacccca 210
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct: 2937 gaagccaaaaatgccgtcagtactgctgtaaaacctgcattctcctttggtagcacccca 2996
Query: 211 gcagcctttacctcggtatacaaccccaaaagaagctgctgcaccatcattttcgttcgg 270
|||||| | | || | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2997 gcagccctaccttctg-atacaaccccaaaagaagctgctgcaccatcattttcgttcgg 3055
Query: 271 gaccacaaagaaacctgttcaaggtgatatgagttcgaaacctgcattctcttttggaag 330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3056 gaccacaaagaaacctgttcaaggtgatatgagttcgaaacctgcattctcttttggaag 3115
Query: 331 ttcctctgccatccagcagccctcaattgaaaaagcttccaatgcaattccttcgtttgc 390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3116 ttcctctgccatccagcagccctcaattgaaaaagcttccaatgcaattccttcgtttgc 3175
Query: 391 aagtcagaacaccagtggccaacctgtcagcggactcaaatttgatttgacagggtttaa 450
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 3176 aagtcagaacaccagtggccagcctgtcagcggactcaaatttgatttgacagggtttaa 3235
Query: 451 aaataataatagacaaactactactactccattttcatatttatcaaatgttggat 506
|||||||||||||||||||||| | ||||| |||||| ||| ||||||||||||||
Sbjct: 3236 aaataataatagacaaactactccgactccgttttcagattcatcaaatgttggat 3291
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,278
Number of Sequences: 1807
Number of extensions: 14278
Number of successful extensions: 2017
Number of sequences better than 1.0e-20: 1
length of query: 951
length of database: 10,358,551
effective HSP length: 16
effective length of query: 935
effective length of database: 10,329,639
effective search space: 9658212465
effective search space used: 9658212465
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)