BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC5ZC02RM1.SCF screened BAC_end
(919 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig615 1312 0.0
>3x_Contig615
Length = 2578
Score = 1312 bits (662), Expect = 0.0
Identities = 779/808 (96%), Gaps = 9/808 (1%)
Strand = Plus / Plus
Query: 43 ctttagaaaaaatggttgaacaatcatctgagcaaattactcagatcttcttgagtggct 102
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 1766 ctttagaaaaaatggttgaacaagcatctgagcaaattactcagatcttcttgagtggct 1825
Query: 103 ctgctgacccattgagaggtgcacaggcttgggagttgattgaattgctaagtgccaatg 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1826 ctgctgacccattgagaggtgcacaggcttgggagttgattgaattgctaagtgccaatg 1885
Query: 163 gatcaattcgctttagagatatcatctatcgtccgttattcaaagctgcgctttatgcgg 222
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 1886 gatcaattcgctttagagatatcatctatcgtccgttattcaaagctgcgccagaagcgg 1945
Query: 223 cccttttggatttagaaaagaacggttttgtcactatgaccagagatagaggggtcttaa 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1946 cccttttggatttagaaaagaacggttttgtcactatgaccagagatagaggggtcttaa 2005
Query: 283 cagatatataccctgcgaaaccgttgttctgtgctgcgttccaatatttactaaacaaca 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2006 cagatatataccctgcgaaaccgttgttctgtgctgcgttccaatatttactaaacaaca 2065
Query: 343 aagagatgtacaatgttctaagaacatcatacttattgagaatggttacctttgagacgg 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2066 aagagatgtacaatgttctaagaacatcatacttattgagaatggttacctttgagacgg 2125
Query: 403 gaagaattaaaaaatgggaagaggaattaagagcattgggtaaagtaagtgatcagaaaa 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2126 gaagaattaaaaaatgggaagaggaattaagagcattgggtaaagtaagtgatcagaaaa 2185
Query: 463 tgttcagaagcagattagcatatttggcaggtaaaatcgatgccagtagtgctgctatcg 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2186 tgttcagaagcagattagcatatttggcaggtaaaatcgatgccagtagtgctgctatcg 2245
Query: 523 atgactgtgaatctgaagttaaagaactatcaaaaaagtaagtacttccccttgtaaata 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2246 atgactgtgaatctgaagttaaagaactatcaaaaaagtaagtacttccccttgtaaata 2305
Query: 583 actaccgcgatctagcatataatctccttatgtattaagatagacttgtttggttgatat 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2306 actaccgcgatctagcatataatctccttatgtattaagatagacttgtttggttgatat 2365
Query: 643 atttctctgttagaattgngttggtatccagaatatttcacttttgtcaactcaatatgt 702
|||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||||
Sbjct: 2366 atttctctgttagaattgggtgggtatccagaatatttcac-tttgtcaactcaatatgt 2424
Query: 703 gatttgacttttttatattataggtgaaatggttccttggaaaaaaaaattatgaataca 762
||||||||||||| |||| ||| |||||||| |||| ||||||||||||| ||||| |||
Sbjct: 2425 gatttgactttttaatatcata-gtgaaatgtttcc-tggaaaaaaaaataatgaaaaca 2482
Query: 763 atacaccttgtaaggaaaagtttttcgaatncctaaaacaccaactgtttcttatgctat 822
||| ||| ||| | || ||| ||||||||| |||| ||||||||||| |||||||||||
Sbjct: 2483 atagaccatgtcaagagaag-ttttcgaat-cctagaacaccaactg-ttcttatgcta- 2538
Query: 823 tattaggttttccgtcaagttttcattt 850
||| |||||| |||| |||||||||||
Sbjct: 2539 tatcaggttt--cgtcgagttttcattt 2564
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8297
Number of Sequences: 1807
Number of extensions: 8297
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 1
length of query: 919
length of database: 10,358,551
effective HSP length: 16
effective length of query: 903
effective length of database: 10,329,639
effective search space: 9327664017
effective search space used: 9327664017
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)