BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC5ZC03RM1.SCF screened BAC_end
         (976 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1727                                                         827   0.0  

>3x_Contig1727 
          Length = 17872

 Score =  827 bits (417), Expect = 0.0
 Identities = 458/469 (97%), Gaps = 2/469 (0%)
 Strand = Plus / Minus

                                                                        
Query: 90   cttattgaaattgaatttcccgtccaaaacaggtacattcgaaagcaaattggaccccac 149
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 5663 cttattgaaattgaatttcccgtccaaaacaggtacatt-gaaagcaaattggaccccac 5605

                                                                        
Query: 150  tagaaacgttcaacgtgttatgtgccaagaataatcttgagatagaatcattatcattta 209
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5604 tagaaacgttcaacgtgttatgtgccaagaataatcttgagatagaatcattatcattta 5545

                                                                        
Query: 210  cctggagcgtctccaccggtttggaaacgttacgagtatcccatgatactatcgtaccat 269
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5544 cctggagcgtctccaccggtttggaaacgttacgagtatcccatgatactatcgtaccat 5485

                                                                        
Query: 270  ccgaatagccagcaaataggtaatggtcatcacctgcaatgtgctggctcgttagagtga 329
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5484 ccgaatagccagcaaataggtaatggtcatcacctgcaatgtgctggctcgttagagtga 5425

                                                                        
Query: 330  cacatgcagatttacttgccggtaaaatatccaatatcttctttctgttatagatatcat 389
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5424 cacatgcagatttacttgccggtaaaatatccaatatcttctttctgttatagatatcat 5365

                                                                        
Query: 390  gaaacgtgatgataccagagtcgtgtccagcaaatacagctttcccctcagtattgtatt 449
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5364 gaaacgtgatgataccagagtcgtgtccagcaaatacagctttcccctcagtattgtatt 5305

                                                                        
Query: 450  ccttgctatggtccaatgcattgtacgatgtggtcgctggatttccctgtctatttgtca 509
            | |||||||||||||||||||||||||||||||||||||||||||||||   ||| | ||
Sbjct: 5304 cgttgctatggtccaatgcattgtacgatgtggtcgctggatttccctggtaattggcca 5245

                                                             
Query: 510  atgataatacaatttatgctattgtttgaattgagcgtatagacacatg 558
            |||| |||||||||||||| || |||||||||||||||| |||||||||
Sbjct: 5244 atga-aatacaatttatgccatcgtttgaattgagcgtaaagacacatg 5197


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,670
Number of Sequences: 1807
Number of extensions: 13670
Number of successful extensions: 384
Number of sequences better than 1.0e-20: 1
length of query: 976
length of database: 10,358,551
effective HSP length: 16
effective length of query: 960
effective length of database: 10,329,639
effective search space: 9916453440
effective search space used: 9916453440
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)