BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC5ZC04FM1.SCF screened BAC_end
         (914 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1615                                                        1067   0.0  

>3x_Contig1615 
          Length = 14844

 Score = 1067 bits (538), Expect = 0.0
 Identities = 602/617 (97%), Gaps = 5/617 (0%)
 Strand = Plus / Minus

                                                                        
Query: 86   tgaacaaattcgacagattgtttggtttttagaagctgcatcgatacttgctcctaaagg 145
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8049 tgaacaaattcgacagattgtttggtttttagaagctgcatcgatacttgctcctaaagg 7990

                                                                        
Query: 146  tacggaatgctggacactaatcatcgatcttaaaaatcatcatatagacaacggtggaac 205
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7989 tacggaatgctggacactaatcatcgatcttaaaaatcatcatatagacaacggtggaac 7930

                                                                        
Query: 206  ccgttccctattctaatacccaccactctctcttgcgaagcaagtgatcaatatatttca 265
            ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7929 ccgttccctatacgaatacccaccactctctcttgcgaagcaagtgatcaatatatttca 7870

                                                                        
Query: 266  agatcattatccagaaagactatacaaatgtttaatctgcaatgtcccaaattctgcgtg 325
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7869 agatcattatccagaaagactatacaaatgtttaatctgcaatgtcccaaattctgcgtg 7810

                                                                        
Query: 326  gacattcttgaaattagtgtacccactaatagaacccgaaccaagaaagaaaatccttta 385
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7809 gacattcttgaaattagtgtacccactaatagaacccgaaccaagaaagaaaatccttta 7750

                                                                        
Query: 386  taatgacccccttgaaatccatatagaatcagatcaattgggtgctgaatacggtggtag 445
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7749 taatgacccccttgaaatccatatagaatcagatcaattgggtgctgaatacggtggtag 7690

                                                                        
Query: 446  attggatttcaattacgataactcgatttactggccggatttaatacagaccgttgaatc 505
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7689 attggatttcaattacgataactcgatttactggccggatttaatacagaccgttgaatc 7630

                                                                        
Query: 506  aagaaagaaagtacantacgaaaagtttgaagccttgggtgcaaacgttgggataagag- 564
            ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 7629 aagaaagaaagtacaatacgaaaagtttgaagccttgggtgcaaacgttgggataagaga 7570

                                                                        
Query: 565  atttgaaataaagag-aatacttaacaatgtaacgcgtacctaccatctacatacttatt 623
            ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| 
Sbjct: 7569 atttgaaataaagagaaatacttaacaatgtaacgcgtacttaccatctacatacttatc 7510

                                                                        
Query: 624  aactttatgtttacctacttcattttttttccttaaatctggaaccctacgtaccatgat 683
            |||||  ||||||||||||||| ||||||||||| ||||| || | ||||||||||||||
Sbjct: 7509 aacttattgtttacctacttca-tttttttcctt-aatcttgatcgctacgtaccatgat 7452

                             
Query: 684  atattttgttgataccg 700
            ||| |||||||||||||
Sbjct: 7451 ata-tttgttgataccg 7436


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 16,975
Number of Sequences: 1807
Number of extensions: 16975
Number of successful extensions: 1793
Number of sequences better than 1.0e-20: 1
length of query: 914
length of database: 10,358,551
effective HSP length: 16
effective length of query: 898
effective length of database: 10,329,639
effective search space: 9276015822
effective search space used: 9276015822
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)