BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC5ZC04RM1.SCF screened BAC_end
(877 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1281 1495 0.0
>3x_Contig1281
Length = 7825
Score = 1495 bits (754), Expect = 0.0
Identities = 780/786 (99%), Gaps = 2/786 (0%)
Strand = Plus / Plus
Query: 52 taatttaacacatgtggttttgaaaacaattgataaatttgatgagaacagctcgttgac 111
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1479 taatttaacacatgtggttttgaaaacaattgataaatttgatgagaacagctcgttgac 1538
Query: 112 tgtggagtcaaaaaggaagcgtaaggtgaaccttaatcacacagcaattgaaaagtatgc 171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1539 tgtggagtcaaaaaggaagcgtaaggtgaaccttaatcacacagcaattgaaaagtatgc 1598
Query: 172 aaaagataatgatttagactatgaatcagcctttgatatattagaagaacaatttaaaca 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1599 aaaagataatgatttagactatgaatcagcctttgatatattagaagaacaatttaaaca 1658
Query: 232 agtgaccataaactttgataaggtttttcgcggatatctgacagaaccaacgatatcaac 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1659 agtgaccataaactttgataaggtttttcgcggatatctgacagaaccaacgatatcaac 1718
Query: 292 ttacatcagatatctacagtcttacaaagaactggaggacaaagacctcataagggttct 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1719 ttacatcagatatctacagtcttacaaagaactggaggacaaagacctcataagggttct 1778
Query: 352 aaaattctttcagagagtgtttgtcaaagcgaaggaagaattatttctatttcgaattga 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1779 aaaattctttcagagagtgtttgtcaaagcgaaggaagaattatttctatttcgaattga 1838
Query: 412 cttcatgatattatgtcgagaaattctaagtcaacaaggtctgcctacaacttctgagct 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1839 cttcatgatattatgtcgagaaattctaagtcaacaaggtctgcctacaacttctgagct 1898
Query: 472 aagaactcatttcacaaaattcaatgagtactaccttaagcagctcaaaaataaactgaa 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1899 aagaactcatttcacaaaattcaatgagtactaccttaagcagctcaaaaataaactgaa 1958
Query: 532 gaaaatgccttctttgtacatcaatatattgttcccaatgctccatgactcccaaatatc 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1959 gaaaatgccttctttgtacatcaatatattgttcccaatgctccatgactcccaaatatc 2018
Query: 592 atactatatgagacatggaaagatgaagttgactgaaggtactcctgacatagtattgcc 651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2019 atactatatgagacatggaaagatgaagttgactgaaggtactcctgacatagtattgcc 2078
Query: 652 cagcacatttatcaatattccagatgaaggctctcttcctaaaaaagttttgttagatat 711
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2079 cagcacatttatcaatattccagatgaaggctctcttcctaaaaaagttttgttagatat 2138
Query: 712 gcaagttggaaatctgggttctagtcttatcgatgatggatatgaagatttgattgaagc 771
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2139 gcaagttggaatcttggtttctagtcttatcgatgatggatatgaagatttgattgaagc 2198
Query: 772 tttggttgctt-atttacagtcaagtttcgatggattgaagggtaaggtagcagaaggca 830
||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2199 ttt-gttgcttaatttacagtcaagtttcgatggattgaagggtaaggtagcagaaggca 2257
Query: 831 tcaatt 836
||||||
Sbjct: 2258 tcaatt 2263
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7384
Number of Sequences: 1807
Number of extensions: 7384
Number of successful extensions: 57
Number of sequences better than 1.0e-20: 1
length of query: 877
length of database: 10,358,551
effective HSP length: 16
effective length of query: 861
effective length of database: 10,329,639
effective search space: 8893819179
effective search space used: 8893819179
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)