BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC5ZC05FM1.SCF screened BAC_end
(976 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig178 731 0.0
3x_Contig1092 684 0.0
>3x_Contig178
Length = 1315
Score = 731 bits (369), Expect = 0.0
Identities = 403/413 (97%), Gaps = 1/413 (0%)
Strand = Plus / Minus
Query: 89 taatagcgttatgttagagctccctgcaagtatgaaatatggtccacaagtccggtgcgt 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 856 taatagcgttatgttagagctccctgcaagtatgaaatatggtccacaagtccggtgcgt 797
Query: 149 actgttaagatctgtatttggcgcagaagcattgtaaattggtggagatatatccatcga 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 actgttaagatctgtatttggcgcagaagcattgtaaattggtggagatatatccatcga 737
Query: 209 ctcagggatcttttttttactcggatgtctgctaccccagctgcggccacagcgtatggc 268
|||||||| | | | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 ctcagggagccaatcatcactcggatgtctgctaccccagctgcggccacagcgtatggc 677
Query: 269 atcacctaatgtagtgcttgaatctattggtagcacatactgttcagtgcaaaataatgt 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 atcacctaatgtagtgcttgaatctattggtagcacatactgttcagtgcaaaataatgt 617
Query: 329 tggtccaccaacttccagtgacattgttgactactttctgtgatttaacacaagttgttg 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 tggtccaccaacttccagtgacattgttgactactttctgtgatttaacacaagttgttg 557
Query: 389 gacagcataatattatgaaggatatatgatcaaattgtaccattatcgatcacttgtgat 448
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 556 gacagcataatattatgaaggatatatgatcaaattgtaccattatcgagcacttgtgat 497
Query: 449 aaataaatacacggacccttgaatttgaaaaaaaaaaatctttgataaatatg 501
|||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct: 496 aaataaatacacggaccc-tgaatttgaaaaagaaaaatctttgataaatatg 445
>3x_Contig1092
Length = 2520
Score = 684 bits (345), Expect = 0.0
Identities = 397/413 (96%), Gaps = 1/413 (0%)
Strand = Plus / Plus
Query: 89 taatagcgttatgttagagctccctgcaagtatgaaatatggtccacaagtccggtgcgt 148
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 234 taatagcgttatgttagagctccctgcaagtatgaaatatggtccacaagtctggtgcgt 293
Query: 149 actgttaagatctgtatttggcgcagaagcattgtaaattggtggagatatatccatcga 208
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 294 actgttaagatctgtatttggtgcagaagcattgtaaattggtggagatatatccatcga 353
Query: 209 ctcagggatcttttttttactcggatgtctgctaccccagctgcggccacagcgtatggc 268
|||||||| | | | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 ctcagggagccaatcatcactcggatgtctgctaccccagctgcggccacagcgtatggc 413
Query: 269 atcacctaatgtagtgcttgaatctattggtagcacatactgttcagtgcaaaataatgt 328
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 414 atcacctaatgtagtgcttgaatcgattggtagcacatactgttcagtgcaaaataatgt 473
Query: 329 tggtccaccaacttccagtgacattgttgactactttctgtgatttaacacaagttgttg 388
||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 474 tggtccaccaacttctagtgacattgttgactactttctgtgatttaacacaacttgttg 533
Query: 389 gacagcataatattatgaaggatatatgatcaaattgtaccattatcgatcacttgtgat 448
|||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 534 gacagcatgatattatgaaggatatatgatcaaattgtaccattatcgagcacttgtgat 593
Query: 449 aaataaatacacggacccttgaatttgaaaaaaaaaaatctttgataaatatg 501
|||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct: 594 aaataaatacacggaccc-tgaatttgaaaaagaaaaatctttgataaatatg 645
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 25,929
Number of Sequences: 1807
Number of extensions: 25929
Number of successful extensions: 2952
Number of sequences better than 1.0e-20: 2
length of query: 976
length of database: 10,358,551
effective HSP length: 16
effective length of query: 960
effective length of database: 10,329,639
effective search space: 9916453440
effective search space used: 9916453440
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)