BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC5ZC05RM1.SCF screened BAC_end
(905 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1209 1061 0.0
>3x_Contig1209
Length = 5033
Score = 1061 bits (535), Expect = 0.0
Identities = 611/631 (96%), Gaps = 4/631 (0%)
Strand = Plus / Minus
Query: 49 tgaagtgctgttagtcgtgcgatgtatgccttaatctataatctttaatattctgttcgc 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2568 tgaagtgctgttagtcgtgcgatgtatgccttaatctataatctttaatattctgttcgc 2509
Query: 109 caccttacatttcagaaggtgtatcgatctatatatttcatatttacaaaacgtcaatcg 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2508 caccttacatttcagaaggtgtatcgatctatatatttcatatttacaaaacgtcaatcg 2449
Query: 169 aagcatgaaagtcgttaataatgacaattctccaaacaaatgctgtgataagtggatgaa 228
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 2448 aagcatgaaagtcgttaataatgacaattctccaaacaaatgctgtgagaagtggatgaa 2389
Query: 229 ctagatatgtgacagcaaatcatctccatctgcactttcatcatcaaataatgtagttca 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2388 ctagatatgtgacagcaaatcatctccatctgcactttcatcatcaaataatgtagttca 2329
Query: 289 atgcaatacttcatgcctttctttttgagatataaaccttttatatgctatctatagact 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2328 atgcaatacttcatgcctttctttttgagatataaaccttttatatgctatctatagact 2269
Query: 349 gtttggcatttttccaagactctgaacaatcctttaaccatgatgttatattgtgggcta 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2268 gtttggcatttttccaagactctgaacaatcctttaaccatgatgttatattgtgggcta 2209
Query: 409 gttcgcggaaaatgaggaaccacttctcatggaaatatttctctaagttattcaaagagt 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2208 gttcgcggaaaatgaggaaccacttctcatggaaatatttctctaagttattcaaagagt 2149
Query: 469 tatccattgactcattgacttgttgtaagtccttttcgatgagtttgaaacatttattca 528
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 2148 tatccattgactcattgacttgttgtaagtccttttcgatgagtttgaaacattcattca 2089
Query: 529 gtttttcaaggtccttttctagtttgtttacctgtacaacccgttcgtcttta-ttagaa 587
|||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 2088 gtttttcaagttccttttctagtttgtttacctgtacaacccgttcgtctttagttagaa 2029
Query: 588 aatggagttctacttcacttgaaatcaaat-aaatcca-aatttttgtttggagaagctg 645
||| |||| ||||||||||||||| ||| | ||||| | || ||||||||||| ||||
Sbjct: 2028 gatgaggttcgacttcacttgaaatcgaatcagatccagacttgttgtttggagatgctg 1969
Query: 646 atgaccctaaaaggcccctttttctgtttgt 676
|||| ||| ||| ||||| || |||||||||
Sbjct: 1968 atga-cctgaaaagccccattatctgtttgt 1939
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8364
Number of Sequences: 1807
Number of extensions: 8364
Number of successful extensions: 61
Number of sequences better than 1.0e-20: 1
length of query: 905
length of database: 10,358,551
effective HSP length: 16
effective length of query: 889
effective length of database: 10,329,639
effective search space: 9183049071
effective search space used: 9183049071
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)