BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC5ZC06FM1.SCF screened BAC_end
(1057 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1787 747 0.0
>3x_Contig1787
Length = 34189
Score = 747 bits (377), Expect = 0.0
Identities = 408/417 (97%), Gaps = 1/417 (0%)
Strand = Plus / Minus
Query: 117 tctaattcaaatatcagtgaatcattgcgttgctctgcctcatctcgtcctaaagttaat 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29069 tctaattcaaatatcagtgaatcattgcgttgctctgcctcatctcgtcctaaagttaat 29010
Query: 177 ttctccaattgttcctcgagaaattgcactttttcaagctcttttgatctcaatcccagc 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29009 ttctccaattgttcctcgagaaattgcactttttcaagctcttttgatctcaatcccagc 28950
Query: 237 tccttttcaaactatttacatttgtcattaactgacttgagtttaacttccaatcttcca 296
|||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28949 tccttttcaaacgaaatacatttgtcattaactgacttgagtttaacttccaatcttcca 28890
Query: 297 atgatctttttcaatcgttcgggatctgatgagttagaattcgtagtatcaggatcctga 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28889 atgatctttttcaatcgttcgggatctgatgagttagaattcgtagtatcaggatcctga 28830
Query: 357 aattgttgcgagttcggtgcagaatttttatagataccctctcttctactgaatatacca 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28829 aattgttgcgagttcggtgcagaatttttatagataccctctcttctactgaatatacca 28770
Query: 417 tacattcgaccttttctaccctcactgagttcaaagtacctgactcccttgacgctacca 476
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28769 tacatccgaccttttctaccctcactgagttcaaagtacctgactcccttgacgctacca 28710
Query: 477 ttgttcttccctaagggttcatttaacttaaccccggatccaaatccccgctgcaaa 533
| |||||||||||||||||||| ||||| ||| || |||||||||||||||||||||
Sbjct: 28709 tcgttcttccctaagggttcatctaactcaacacc-gatccaaatccccgctgcaaa 28654
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6858
Number of Sequences: 1807
Number of extensions: 6858
Number of successful extensions: 44
Number of sequences better than 1.0e-20: 1
length of query: 1057
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1041
effective length of database: 10,329,639
effective search space: 10753154199
effective search space used: 10753154199
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)