BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC5ZC06RM1.SCF screened BAC_end
(1018 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1248 821 0.0
>3x_Contig1248
Length = 5957
Score = 821 bits (414), Expect = 0.0
Identities = 447/454 (98%), Gaps = 3/454 (0%)
Strand = Plus / Minus
Query: 91 cttcaaaaatttt-gatagtttaaaat-acattagaacaagatcaatctaaaagttaacc 148
||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 4195 cttcaaaaatttttgatagtttaaaatcacattagaacaagatcaatctaaaagttaacc 4136
Query: 149 ataagcagggaattaaaaatagcgtcaattgtgtttgaagtgctattccaataactgcac 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4135 ataagcagggaattaaaaatagcgtcaattgtgtttgaagtgctattccaataactgcac 4076
Query: 209 acgctccaagggcttttaaaatattacagcaaaatgttcagaccgacatcatcgtgtctt 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4075 acgctccaagggcttttaaaatattacagcaaaatgttcagaccgacatcatcgtgtctt 4016
Query: 269 tctgccttaaccaaacgtacaaagagagtacaggtacagttattaaaagattttcctcag 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4015 tctgccttaaccaaacgtacaaagagagtacaggtacagttattaaaagattttcctcag 3956
Query: 329 ttccaatttcataccggcgaggtggtaaatgtcaagccctcactaatgagaaacttcttg 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3955 ttccaatttcataccggcgaggtggtaaatgtcaagccctcactaatgagaaacttcttg 3896
Query: 389 cacaactataatggagcccgctacattctaaaggaaactgatattgaccaagccctgttg 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3895 cacaactataatggagcccgctacattctaaaggaaactgatattgaccaagccctgttg 3836
Query: 449 acctcagctaagagatcacgtgcatcagcagcagctttattaaaaacaaccgaatcaacg 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3835 acctcagctaagagatcacgtgcatcagcagcagctttattaaaaacaaccgaatcaacg 3776
Query: 509 gtgaaagaatactgaacatatcgttaagaaggct 542
||| ||||| |||||||| | ||| |||||||||
Sbjct: 3775 gtg-aagaagactgaacagaacgtaaagaaggct 3743
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,269
Number of Sequences: 1807
Number of extensions: 10269
Number of successful extensions: 80
Number of sequences better than 1.0e-20: 1
length of query: 1018
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1002
effective length of database: 10,329,639
effective search space: 10350298278
effective search space used: 10350298278
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)