BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC5ZC07RM1.SCF screened BAC_end
(908 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig101 1166 0.0
>3x_Contig101
Length = 1470
Score = 1166 bits (588), Expect = 0.0
Identities = 674/695 (96%), Gaps = 6/695 (0%)
Strand = Plus / Plus
Query: 49 gtagtggatgaggaaccaaagagaaagatactcgtcgaacc-catgagtcagaaggagta 107
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 672 gtagtggatgaggaaccaaagagaaagatactcgtcgaaccacatgagtcagaaggagta 731
Query: 108 gacaaggaaccttcgaaaaatgaccagcatttataattacaatattatgtagtaacactt 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 gacaaggaaccttcgaaaaatgaccagcatttataattacaatattatgtagtaacactt 791
Query: 168 gctgtatataaatattttaataggattccgagataatatcatcgatatccaaataatgtt 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792 gctgtatataaatattttaataggattccgagataatatcatcgatatccaaataatgtt 851
Query: 228 ttagcttccatggttaacttccctgttgaacggtggtgaatagaaccttaaaatactatg 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 852 ttagcttccatggttaacttccctgttgaacggtggtgaatagaaccttaaaatactatg 911
Query: 288 aaaaaaacagtcaaatggctttagcattctattgaagggtttaatgaacttttgaaagtg 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 912 aaaaaaacagtcaaatggctttagcattctattgaagggtttaatgaacttttgaaagtg 971
Query: 348 cagcctctaaaagataaaagaattgcaccgcaaggtcctttacggagctgtgtggtcatc 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 972 cagcctctaaaagataaaagaattgcaccgcaaggtcctttacggagctgtgtggtcatc 1031
Query: 408 cattattatgtcaaaccaagaagccaccggaagttggcagtttttacacataaataatga 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1032 cattattatgtcaaaccaagaagccaccggaagttggcagtttttacacataaataatga 1091
Query: 468 tatttcgttggctaaaattacgaaagagtcatcgtcatccatcatcggtgtactgaagct 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1092 tatttcgttggctaaaattacgaaagagtcatcgtcatccatcatcggtgtactgaagct 1151
Query: 528 ctgcgaggatgagaangtcttacgggttcgtgttagctcagagcagattcc-aaggaatt 586
||||||||||||||| |||||||| ||||||| ||||||||||||||||| ||||||||
Sbjct: 1152 ctgcgaggatgagaagttcttacggtttcgtgtaagctcagagcagattccaaaggaatt 1211
Query: 587 gggctgttcgaatggagtaaattcaattagcgaactttattatatattgacgaaaggagt 646
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct: 1212 gggctgttcgaatggagtagattcaattagcgaactttataatatattgacgaaaggagt 1271
Query: 647 gggaaggtagctcaattggtaccatggataaaaagaacataatattccttccagagaaag 706
||| ||||||||||||| ||||||||||||||| ||||||| ||| |||||||||||
Sbjct: 1272 -ggagggtagctcaattgtagccatggataaaaagatcataata-tccatccagagaaag 1329
Query: 707 aagggttctttaattggaaattggaaacggcaatt 741
|||| ||| || | |||||||| ||||||||||||
Sbjct: 1330 aaggcttc-ttcagtggaaatt-gaaacggcaatt 1362
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7563
Number of Sequences: 1807
Number of extensions: 7563
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 908
length of database: 10,358,551
effective HSP length: 16
effective length of query: 892
effective length of database: 10,329,639
effective search space: 9214037988
effective search space used: 9214037988
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)