BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC5ZC08FM1.SCF screened BAC_end
(926 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig661 755 0.0
3x_Contig540 119 1e-26
3x_Contig1088 111 3e-24
3x_Contig1769 109 1e-23
>3x_Contig661
Length = 2026
Score = 755 bits (381), Expect = 0.0
Identities = 467/485 (96%), Gaps = 8/485 (1%)
Strand = Plus / Minus
Query: 84 tatattcgctgtcacacgagttgttattcttcttggaataactaaacaacagactgcttc 143
||||||||||||||||||||||||| ||| ||||||| | |||||||||||||||||||
Sbjct: 603 tatattcgctgtcacacgagttgtttttcgtcttggattttctaaacaacagactgcttc 544
Query: 144 gatatctgtattccctatcaaa-cacttcgtaagtacttcctccaaatatctctctctcg 202
|||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct: 543 gatatctgtattccctatcaaaacact-cgtaagtacttcctccaaatatctctctctcg 485
Query: 203 ggatctaagtctgagtatgggttaacatttttatcctcttttaaactctgtttaggagca 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 ggatctaagtctgagtatgggttaacatttttatcctcttttaaactctgtttaggagca 425
Query: 263 ctaccatcactaacgatatcgagtctttgtatatcttcacagatacctctt-gtcggat- 320
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 424 ctaccatcactaacgatatcgagtctttgtatatcttcacagatacctctttgtcggatt 365
Query: 321 cattacttccttgcggagactcagtgacgctgccat-gtaggtgatcctggttgtcgcag 379
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 364 cattacttccttgcggagactcagtgacgctgccattgtaggtgatcctggttgtcgcag 305
Query: 380 tcacagtcacgtgtaatt-aattcaaaaccttcggtatcagatgaatccatagtgtttac 438
|||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct: 304 tcacagtcacgtgtaatttaattcaaaac-ttcggtatcagatgaatccatagtgtttac 246
Query: 439 tagctatatatagctagtgtgttgatgcacctggcgatctgtcatgactgtgttgatggt 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 tagctatatatagctagtgtgttgatgcacctggcgatctgtcatgactgtgttgatggt 186
Query: 499 ctttccccagatctatggcctctttatttaataactca-aatgggttaaagaagtttcat 557
||||||||||||||||||||||||||| |||||||||| | ||| |||| || |||||||
Sbjct: 185 ctttccccagatctatggcctctttatataataactcagattggtttaatgatgtttcat 126
Query: 558 gttga 562
|||||
Sbjct: 125 gttga 121
>3x_Contig540
Length = 1644
Score = 119 bits (60), Expect = 1e-26
Identities = 151/178 (84%), Gaps = 5/178 (2%)
Strand = Plus / Plus
Query: 383 cagtcacgtgtaattaattcaaaaccttcggtatcagatgaatccatagtgtttactagc 442
||||||||||| ||| ||||| | ||| |||||| ||||||||||||||||||| ||||
Sbjct: 1119 cagtcacgtgttgttatttcaagatctttggtatctgatgaatccatagtgtttattagc 1178
Query: 443 tatatat--agctagtg--tgttgatgcacctggcgatctgtcatgactgtgttgatggt 498
||||||| || ||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1179 tatatatctag-tagtgaatgttgatgcacctggcgatctggcatgactgtgttgatggt 1237
Query: 499 ctttccccagatctatggcctctttatttaataactcaaatgggttaaagaagtttca 556
| || |||||||| ||||| |||| |||||| ||| || |||||| || ||||||
Sbjct: 1238 ccttgttcagatctaatgcctccttatataataattcagattggttaatgatgtttca 1295
>3x_Contig1088
Length = 4585
Score = 111 bits (56), Expect = 3e-24
Identities = 150/178 (84%), Gaps = 5/178 (2%)
Strand = Plus / Plus
Query: 383 cagtcacgtgtaattaattcaaaaccttcggtatcagatgaatccatagtgtttactagc 442
||||||||||| || ||||| | ||| |||||| ||||||||||||||||||| ||||
Sbjct: 1128 cagtcacgtgttgttgtttcaagatctttggtatctgatgaatccatagtgtttattagc 1187
Query: 443 tatatat--agctagtgt--gttgatgcacctggcgatctgtcatgactgtgttgatggt 498
||||||| || |||||| ||||||||||||||||||||| |||||| |||||||||||
Sbjct: 1188 tatatatctag-tagtgtatgttgatgcacctggcgatctggcatgaccgtgttgatggt 1246
Query: 499 ctttccccagatctatggcctctttatttaataactcaaatgggttaaagaagtttca 556
| || |||||||| ||||| |||| |||||||||| || |||||| || ||||||
Sbjct: 1247 ccttgttcagatctaatgcctccttatataataactcagattggttaatgatgtttca 1304
>3x_Contig1769
Length = 25795
Score = 109 bits (55), Expect = 1e-23
Identities = 128/149 (85%), Gaps = 5/149 (3%)
Strand = Plus / Minus
Query: 412 ggtatcagatgaatccatagtgtttactagctatatat--agctagtgt--gttgatgca 467
|||||| |||||||||||| | |||| ||||||||||| || |||||| |||||||||
Sbjct: 24414 ggtatctgatgaatccatattctttattagctatatatctag-tagtgtatgttgatgca 24356
Query: 468 cctggcgatctgtcatgactgtgttgatggtctttccccagatctatggcctctttattt 527
||| |||||||||||||||||||||||| |||||| ||||||||| ||||| |||| |
Sbjct: 24355 cctagcgatctgtcatgactgtgttgatcgtctttgtccagatctaatgcctccttatat 24296
Query: 528 aataactcaaatgggttaaagaagtttca 556
||||||||| || |||||| || ||||||
Sbjct: 24295 aataactcagattggttaatgatgtttca 24267
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 17,525
Number of Sequences: 1807
Number of extensions: 17525
Number of successful extensions: 2610
Number of sequences better than 1.0e-20: 4
length of query: 926
length of database: 10,358,551
effective HSP length: 16
effective length of query: 910
effective length of database: 10,329,639
effective search space: 9399971490
effective search space used: 9399971490
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)