BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC5ZC08RM1.SCF screened BAC_end (1017 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1704 656 0.0 >3x_Contig1704 Length = 14855 Score = 656 bits (331), Expect = 0.0 Identities = 334/335 (99%) Strand = Plus / Plus Query: 47 ctattcttagaacatgccgccatggtcaattacagagcatatttacgaacgtcgaatatt 106 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6601 ctattcttagaacatgccgccatggtcaattacagagcatatttacgaacgtcgaatatt 6660 Query: 107 ttagagcattttaaaaagttcgagagaattattggttgctgccaagatagaaatgttcaa 166 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6661 ttagagcattttaaaaagttcgagagaattattggttgctgccaagatagaaatgttcaa 6720 Query: 167 aagttgctattttcatacgtatgcaacgttttcatgatcttcaaagaaaatacactccaa 226 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6721 aagttgctattttcatacgtatgcaacgttttcatgatcttcaaagaaaatacactccaa 6780 Query: 227 gatatgtggaatttgacaagaaagagtttagttccatgctttcgcaggatgaaactagac 286 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6781 gatatgtggaatttgacaagaaagagtttagttccatgctttcgcaggatgaaactagac 6840 Query: 287 aaatttgaaatcttcaacttttcttcagagccaatgttgtgtcttttatattctggctct 346 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6841 aaatttgaaatcttcaacttttcttcagagccaatgttgtgtcttttatattctggctct 6900 Query: 347 catttttcttaccaattcaagtgggctcatttgtg 381 |||||||||||||||||||||||| |||||||||| Sbjct: 6901 catttttcttaccaattcaagtggtctcatttgtg 6935 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,318 Number of Sequences: 1807 Number of extensions: 10318 Number of successful extensions: 85 Number of sequences better than 1.0e-20: 1 length of query: 1017 length of database: 10,358,551 effective HSP length: 16 effective length of query: 1001 effective length of database: 10,329,639 effective search space: 10339968639 effective search space used: 10339968639 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 51 (101.6 bits)