BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC5ZC08RM1.SCF screened BAC_end
         (1017 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1704                                                         656   0.0  

>3x_Contig1704 
          Length = 14855

 Score =  656 bits (331), Expect = 0.0
 Identities = 334/335 (99%)
 Strand = Plus / Plus

                                                                        
Query: 47   ctattcttagaacatgccgccatggtcaattacagagcatatttacgaacgtcgaatatt 106
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6601 ctattcttagaacatgccgccatggtcaattacagagcatatttacgaacgtcgaatatt 6660

                                                                        
Query: 107  ttagagcattttaaaaagttcgagagaattattggttgctgccaagatagaaatgttcaa 166
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6661 ttagagcattttaaaaagttcgagagaattattggttgctgccaagatagaaatgttcaa 6720

                                                                        
Query: 167  aagttgctattttcatacgtatgcaacgttttcatgatcttcaaagaaaatacactccaa 226
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6721 aagttgctattttcatacgtatgcaacgttttcatgatcttcaaagaaaatacactccaa 6780

                                                                        
Query: 227  gatatgtggaatttgacaagaaagagtttagttccatgctttcgcaggatgaaactagac 286
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6781 gatatgtggaatttgacaagaaagagtttagttccatgctttcgcaggatgaaactagac 6840

                                                                        
Query: 287  aaatttgaaatcttcaacttttcttcagagccaatgttgtgtcttttatattctggctct 346
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6841 aaatttgaaatcttcaacttttcttcagagccaatgttgtgtcttttatattctggctct 6900

                                               
Query: 347  catttttcttaccaattcaagtgggctcatttgtg 381
            |||||||||||||||||||||||| ||||||||||
Sbjct: 6901 catttttcttaccaattcaagtggtctcatttgtg 6935


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,318
Number of Sequences: 1807
Number of extensions: 10318
Number of successful extensions: 85
Number of sequences better than 1.0e-20: 1
length of query: 1017
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1001
effective length of database: 10,329,639
effective search space: 10339968639
effective search space used: 10339968639
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)