BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC5ZC09RM1.SCF screened BAC_end
         (1069 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1799                                                         357   3e-98

>3x_Contig1799 
          Length = 39855

 Score =  357 bits (180), Expect = 3e-98
 Identities = 219/231 (94%), Gaps = 2/231 (0%)
 Strand = Plus / Plus

                                                                         
Query: 78    acgtggnagccatatagtatctagaacacctaaactatncacaatcttgnggccggntag 137
             ||||||  |||||||||||||||||||||||||||||| |||||||||| |||||| |||
Sbjct: 37111 acgtggatgccatatagtatctagaacacctaaactattcacaatcttgtggccggttag 37170

                                                                         
Query: 138   tttcttcaacgggacgatcatagggttcttcattaaatcgtcatagaccgnggcatggaa 197
             |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 37171 tttcttcaacgggacgatcatagggttcttcattaaatcgtcatagaccgtggcatggaa 37230

                                                                         
Query: 198   aacatgngatg-caccatcatccgcagctgagcaaaacagcggtagtttcttgtggaaac 256
             |||||| ||||  ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 37231 aacatg-gatgttaccatcatccgcagctgagcaaaacagtggtagtttcttgtggaaac 37289

                                                                
Query: 257   ttacgcttcttacatccttctcatggtatcttaaggtcttatatggagtgc 307
             |||||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct: 37290 ttacgcttcttacagccttctcatggtatctcaaggtcttatatggagtgc 37340


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,800
Number of Sequences: 1807
Number of extensions: 10800
Number of successful extensions: 103
Number of sequences better than 1.0e-20: 1
length of query: 1069
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1053
effective length of database: 10,329,639
effective search space: 10877109867
effective search space used: 10877109867
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)