BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC5ZC09RM1.SCF screened BAC_end (1069 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1799 357 3e-98 >3x_Contig1799 Length = 39855 Score = 357 bits (180), Expect = 3e-98 Identities = 219/231 (94%), Gaps = 2/231 (0%) Strand = Plus / Plus Query: 78 acgtggnagccatatagtatctagaacacctaaactatncacaatcttgnggccggntag 137 |||||| |||||||||||||||||||||||||||||| |||||||||| |||||| ||| Sbjct: 37111 acgtggatgccatatagtatctagaacacctaaactattcacaatcttgtggccggttag 37170 Query: 138 tttcttcaacgggacgatcatagggttcttcattaaatcgtcatagaccgnggcatggaa 197 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 37171 tttcttcaacgggacgatcatagggttcttcattaaatcgtcatagaccgtggcatggaa 37230 Query: 198 aacatgngatg-caccatcatccgcagctgagcaaaacagcggtagtttcttgtggaaac 256 |||||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 37231 aacatg-gatgttaccatcatccgcagctgagcaaaacagtggtagtttcttgtggaaac 37289 Query: 257 ttacgcttcttacatccttctcatggtatcttaaggtcttatatggagtgc 307 |||||||||||||| |||||||||||||||| ||||||||||||||||||| Sbjct: 37290 ttacgcttcttacagccttctcatggtatctcaaggtcttatatggagtgc 37340 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,800 Number of Sequences: 1807 Number of extensions: 10800 Number of successful extensions: 103 Number of sequences better than 1.0e-20: 1 length of query: 1069 length of database: 10,358,551 effective HSP length: 16 effective length of query: 1053 effective length of database: 10,329,639 effective search space: 10877109867 effective search space used: 10877109867 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 51 (101.6 bits)