BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC5ZC10FM1.SCF screened BAC_end
(924 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1199 854 0.0
>3x_Contig1199
Length = 6044
Score = 854 bits (431), Expect = 0.0
Identities = 483/495 (97%), Gaps = 4/495 (0%)
Strand = Plus / Minus
Query: 224 tggatcgtgaactaaatgcgaagttaaaggagttaaagaaaagtattgatgaatgctacc 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6024 tggatcgtgaactaaatgcgaagttaaaggagttaaagaaaagtattgatgaatgctacc 5965
Query: 284 agcagagaacacagttaatctcagatttagatgatgtgaaaaaaaattcagttgtcagtt 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5964 agcagagaacacagttaatctcagatttagatgatgtgaaaaaaaattcagttgtcagtt 5905
Query: 344 ctgatgatatggacaaccaaatggttgaacgatttaaagaaatggctacagagattgagc 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5904 ctgatgatatggacaaccaaatggttgaacgatttaaagaaatggctacagagattgagc 5845
Query: 404 ttgtatcaaatcaatataaagaagaggcttctaaagatgcttcaaaagagaagtttgaaa 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5844 ttgtatcaaatcaatataaagaagaggcttctaaagatgcttcaaaagagaagtttgaaa 5785
Query: 464 cattcaaaagtgtacatgtccccaaattacaaacaatttcgcaagcaatgttcaataaag 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5784 cattcaaaagtgtacatgtccccaaattacaaacaatttcgcaagcaatgttcaataaag 5725
Query: 524 ctttcacgaatttagatacaaaagctactgtccagcagaagttgcaacagttgtactttt 583
||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 5724 cttccacgaatttagatacaaaagctactgtccagcagaagttgcaacagttgtaccttt 5665
Query: 584 tcgttgcaaaatcgcagatgagcgttatattggtgaagtccgtgttaactaaagacgtta 643
|||||||||||||||||||||||| ||| |||||||||| |||||||||||||||||||
Sbjct: 5664 ccgttgcaaaatcgcagatgagcgtaataatggtgaagtcggtgttaactaaagacgtta 5605
Query: 644 agaccaatatgaagttttttgaagaatgaagaaactgaaattattttcaggtattggatt 703
|||||||||||||| |||||||||||||||| ||||||||||| | ||| ||||||||||
Sbjct: 5604 agaccaatatgaag-tttttgaagaatgaag-aactgaaatta-tctcaagtattggatt 5548
Query: 704 tgccttatgtgttat 718
|||| ||||||||||
Sbjct: 5547 tgcc-tatgtgttat 5534
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9070
Number of Sequences: 1807
Number of extensions: 9070
Number of successful extensions: 77
Number of sequences better than 1.0e-20: 1
length of query: 924
length of database: 10,358,551
effective HSP length: 16
effective length of query: 908
effective length of database: 10,329,639
effective search space: 9379312212
effective search space used: 9379312212
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)