BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC5ZC10RM1.SCF screened BAC_end
(916 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1382 507 e-143
>3x_Contig1382
Length = 8314
Score = 507 bits (256), Expect = e-143
Identities = 266/268 (99%), Gaps = 1/268 (0%)
Strand = Plus / Minus
Query: 46 ttccgaggattggaaagagaatttcaatggtacaataaatgggttatcaacacgagctaa 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 ttccgaggattggaaagagaatttcaatggtacaataaatgggttatcaacacgagctaa 231
Query: 106 gacagtacgttctgctaaagtgtgagtaacttcggatttggagacaatgtaagacttcct 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 230 gacagtacgttctgctaaagtgtgagtaacttcggatttggagacaatgtaagacttcct 171
Query: 166 aatagctttcaatgcatagattttgtttgtatcacgctttctaacctgcatcactttccc 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 170 aatagctttcaatgcatagattttgtttgtatcacgctttctaacctgcatcactttccc 111
Query: 226 gaaagaacctttaccgatgactttcaacaaatcaaaatcgtctatcgataaatgcttatg 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110 gaaagaacctttaccgatgactttcaacaaatcaaaatcgtctatcgataaatgcttatg 51
Query: 286 agtagaaggcttgtagtca-acactgag 312
|||||||||||| |||||| ||||||||
Sbjct: 50 agtagaaggcttatagtcacacactgag 23
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8198
Number of Sequences: 1807
Number of extensions: 8198
Number of successful extensions: 96
Number of sequences better than 1.0e-20: 1
length of query: 916
length of database: 10,358,551
effective HSP length: 16
effective length of query: 900
effective length of database: 10,329,639
effective search space: 9296675100
effective search space used: 9296675100
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)