BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC5ZC11FM1.SCF screened BAC_end
(947 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1125 1106 0.0
>3x_Contig1125
Length = 5749
Score = 1106 bits (558), Expect = 0.0
Identities = 639/664 (96%), Gaps = 2/664 (0%)
Strand = Plus / Plus
Query: 86 tacagcctcatcagacgactagttattactgtactgactgtgctttttttatttgatata 145
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 3613 tacagcctcatcagacgactagttattactgtactgactgtgccttttttatttgatata 3672
Query: 146 agaggagaatttaatataatcgatatactaaaccgaaaacatattaagaaataagaactg 205
||||||||||||||||||||||| ||||||||||| ||||||||||| ||| || || ||
Sbjct: 3673 agaggagaatttaatataatcgagatactaaaccggaaacatattaaaaaaaaaaaaatg 3732
Query: 206 gtcattgggctttatttgagagttgtaagattctaaactgatattgatatttagaaaagc 265
|| |||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3733 gtaattgggaatattttgagagttgtaagattctaaactgatattgatatttagaaaagc 3792
Query: 266 tggaaataacaacgaatagaagtttaaacaggaatcaacgaataacagcagtgaaaaaaa 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3793 tggaaataacaacgaatagaagtttaaacaggaatcaacgaataacagcagtgaaaaaaa 3852
Query: 326 ttgaaactattatcaacacattataattgaattggtgcaaatgaattatccgcctccctt 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3853 ttgaaactattatcaacacattataattgaattggtgcaaatgaattatccgcctccctt 3912
Query: 386 gtcaggattccagaaacctgctgggcaagcggtgcctcagatggtgggtacgccgcaagc 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3913 gtcaggattccagaaacctgctgggcaagcggtgcctcagatggtgggtacgccgcaagc 3972
Query: 446 tgttactcagcagcttcaccagcatccgccaggtttgatgggaaatcaaggaaaccaaca 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3973 tgttactcagcagcttcaccagcatccgccaggtttgatgggaaatcaaggaaaccaaca 4032
Query: 506 tcagccggcccaactaaacaatgtccttcctatgatgatgaaccaggttcagaatgtgat 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4033 tcagccggcccaactaaacaatgtccttcctatgatgatgaaccaggttcagaatgtgat 4092
Query: 566 aactggcggtgcagggggaccacagcaagctgtgggtccttctaatgttgggacacctaa 625
|||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct: 4093 aactggcggtgcagggggaccacagcaagctgtgggtcctcctaatgttggaacacctaa 4152
Query: 626 tgcagnccangctgcgttagtggctcagcaattgtccaatgctaataattccgttatgcc 685
||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 4153 tgcagcccaggctgcgttagtggctcagcaattgtccaatgctaataa-tccgttatgcc 4211
Query: 686 attcacatttagcggaccccttgttggttgatttacccattttggaagttacagctttaa 745
|| |||||||||||||||||| ||| ||||| || ||| ||||||||||||||||| ||
Sbjct: 4212 atccacatttagcggacccctcgtt-gttgaattcaccaatttggaagttacagcttcaa 4270
Query: 746 ttgg 749
||||
Sbjct: 4271 ttgg 4274
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7676
Number of Sequences: 1807
Number of extensions: 7676
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 947
length of database: 10,358,551
effective HSP length: 16
effective length of query: 931
effective length of database: 10,329,639
effective search space: 9616893909
effective search space used: 9616893909
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)