BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC5ZC11RM1.SCF screened BAC_end
(980 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1765 1053 0.0
>3x_Contig1765
Length = 24733
Score = 1053 bits (531), Expect = 0.0
Identities = 546/551 (99%)
Strand = Plus / Plus
Query: 50 tagcataaactgaaatatccattggcaatctacaattaacagctataatctatcatccag 109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17203 tagcataaactgaaatatccattggcaatctacaattaacagctataatctatcatccag 17262
Query: 110 gcccctctgaacattgcatcggatcaataatctatcatagaacacattaagatatggctt 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17263 gcccctctgaacattgcatcggatcaataatctatcatagaacacattaagatatggctt 17322
Query: 170 taacttcgatctttggtggtagctcttcatcatctggtaccccagccacatccagtccta 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17323 taacttcgatctttggtggtagctcttcatcatctggtaccccagccacatccagtccta 17382
Query: 230 gcgatgtcaagacccaacttaaatctcaaatctctcaagaattagccatcgccaatgcta 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17383 gcgatgtcaagacccaacttaaatctcaaatctctcaagaattagccatcgccaatgcta 17442
Query: 290 ccgagttagttaacaaagtcactgagaactgttttgagaaatgtctgaatgctccatatg 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17443 ccgagttagttaacaaagtcactgagaactgttttgagaaatgtctgaatgctccatatg 17502
Query: 350 ctgcttctcaagataactgcgtcgaccaatgtttggctaaatatatgagaagttggaatg 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17503 ctgcttctcaagataactgcgtcgaccaatgtttggctaaatatatgagaagttggaatg 17562
Query: 410 ccatttcaaaggcttacattaacagaattcagcaagcttcggttaacggtgaaatctaag 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17563 ccatttcaaaggcttacattaacagaattcagcaagcttcggttaacggtgaaatctaag 17622
Query: 470 gggcgcaacttttgagataaaagaagttatttaatgctctgattcattacaagctacatg 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17623 gggcgcaacttttgagataaaagaagttatttaatgctctgattcattacaagctacatg 17682
Query: 530 gatatagatttggataatgttatatttccgtcttacgtataatcatacattatgaaagct 589
||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 17683 tatatagatttgtataatgttatattcgcgtcttacgtataatcatacattatgaatgct 17742
Query: 590 atttcataccc 600
|||||||||||
Sbjct: 17743 atttcataccc 17753
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8787
Number of Sequences: 1807
Number of extensions: 8787
Number of successful extensions: 41
Number of sequences better than 1.0e-20: 1
length of query: 980
length of database: 10,358,551
effective HSP length: 16
effective length of query: 964
effective length of database: 10,329,639
effective search space: 9957771996
effective search space used: 9957771996
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)