BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC5ZC12FM1.SCF screened BAC_end
(1038 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig893 668 0.0
>3x_Contig893
Length = 2804
Score = 668 bits (337), Expect = 0.0
Identities = 386/401 (96%), Gaps = 1/401 (0%)
Strand = Plus / Plus
Query: 120 ttatataaaattggaacaaaatctattcagttctcatacagtaatcgtactcaaatcgaa 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1088 ttatataaaattggaacaaaatctattcagttctcatacagtaatcgtactcaaatcgaa 1147
Query: 180 attcaaggcctttaatctcgatacgatgtctgccacgtcacgggtagcaaattggtccat 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1148 attcaaggcctttaatctcgatacgatgtctgccacgtcacgggtagcaaattggtccat 1207
Query: 240 gaatttcttattttttttatctaatccatccgctttgtgttccatcttttccaatgggaa 299
|||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1208 gaatttcttaaacgatagatctaatccatccgctttgtgttccatcttttccaatgggaa 1267
Query: 300 aagggtatgcaatagtttacgcttaccagcagtaattctcaatggttctccatcgacaac 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1268 aagggtatgcaatagtttacgcttaccagcagtaattctcaatggttctccatcgacaac 1327
Query: 360 aactttgtacaatacggtgacttcgttgccatttggcatctgtgacagtctcagcgccct 419
||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct: 1328 aactttgtacaatacggtgacttcgttgcca-ttggcatctgtgacagtctcagcgtcct 1386
Query: 420 tatgtacaggattggcagctttttccttacagttcaatagtctgcaacggagtttccaac 479
||||||||||||||||||||||||||||| |||||| ||||||| |||||||||||||||
Sbjct: 1387 tatgtacaggattggcagctttttccttagagttcagtagtctgtaacggagtttccaac 1446
Query: 480 cagtatgtcccaattcctttattttggcggccttttcctta 520
||||| ||||||||||||| ||| |||||||||||||||||
Sbjct: 1447 cagtaggtcccaattccttaattctggcggccttttcctta 1487
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 17,792
Number of Sequences: 1807
Number of extensions: 17792
Number of successful extensions: 258
Number of sequences better than 1.0e-20: 1
length of query: 1038
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1022
effective length of database: 10,329,639
effective search space: 10556891058
effective search space used: 10556891058
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)