BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC5ZC12RM1.SCF screened BAC_end
(1050 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig888 757 0.0
>3x_Contig888
Length = 2072
Score = 757 bits (382), Expect = 0.0
Identities = 423/434 (97%), Gaps = 2/434 (0%)
Strand = Plus / Minus
Query: 73 cttcgtaacacgaaa-tacttcttgatgcgatggacactgctatcacaaaatccataaaa 131
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 920 cttcgtaacacgaaactacttcttgatgcgatggacactgctatcacaaaatccataaaa 861
Query: 132 gaaatacaatccttgcatgattacacgccagccaagaaaagtgggtttggtcacaagctg 191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 860 gaaatacaatccttgcatgattacacgccagccaagaaaagtgggtttggtcacaagctg 801
Query: 192 aaggatgtttatcaaaagaaccataagaagagccatgaggcagaagccggtattatctat 251
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 800 aaggatgtttatcaaaagaaccataagaagagccatgaggcagaagccggtatgaactat 741
Query: 252 aaatggagcaacaaacagcttttcgagctaggcgttttgtcgaaagtaactggaaatggt 311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 aaatggagcaacaaacagcttttcgagctaggcgttttgtcgaaagtaactggaaatggt 681
Query: 312 gctaagaattcatcagtcagctttttcggttccagtggatcaaagtctcaatatgttgat 371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 gctaagaattcatcagtcagctttttcggttccagtggatcaaagtctcaatatgttgat 621
Query: 372 ctcaaattctctactatagatggcgaagtgtttggaattgagttgattgacaataataac 431
|||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |||
Sbjct: 620 ctcaaattctctactagagatggtgaagtgtttggaattgagttgattgacaataagaac 561
Query: 432 aagtttgattctaatttacaatctgttgtgaagctcaccgaattgattgaaaaagaagca 491
||||||||||||||||||||||||||||||||| | | |||||||||||||||||||||
Sbjct: 560 aagtttgattctaatttacaatctgttgtgaagtttagtgaattgattgaaaaagaagca 501
Query: 492 gcttgaccgccatt 505
|| |||||||||||
Sbjct: 500 gc-tgaccgccatt 488
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 15,023
Number of Sequences: 1807
Number of extensions: 15023
Number of successful extensions: 236
Number of sequences better than 1.0e-20: 1
length of query: 1050
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1034
effective length of database: 10,329,639
effective search space: 10680846726
effective search space used: 10680846726
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)