BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC5ZD01FM1.SCF screened BAC_end
(886 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1477 1330 0.0
>3x_Contig1477
Length = 9322
Score = 1330 bits (671), Expect = 0.0
Identities = 719/731 (98%), Gaps = 3/731 (0%)
Strand = Plus / Plus
Query: 85 aaacatccaggcacatttcagatagtgtcatacaagcgcgcattatagctgccgtcatag 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8564 aaacatccaggcacatttcagatagtgtcatacaagcgcgcattatagctgccgtcatag 8623
Query: 145 taaaccatttttttgaagggaagaaatctccctttatcaaacgatgaatggtaacaaata 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8624 taaaccatttttttgaagggaagaaatctccctttatcaaacgatgaatggtaacaaata 8683
Query: 205 tggttgcttttttttcccgtactatttttgtgacgtaataaggagattggaagtcttcat 264
||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8684 tggttgccaggtcttcccgtactatttttgtgacgtaataaggagattggaagtcttcat 8743
Query: 265 cctcccgacatgcttcaatggcttttataaaagaaccatgagaatcgtattgctgctcga 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8744 cctcccgacatgcttcaatggcttttataaaagaaccatgagaatcgtattgctgctcga 8803
Query: 325 caattttagtcaaagcaataataatagttgcagtctcgagtaaaacaccaacaaacactt 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8804 caattttagtcaaagcaataataatagttgcagtctcgagtaaaacaccaacaaacactt 8863
Query: 385 catcagtcaccatagaatctactgttatttccggaagaggtgtcactgtagggaatagag 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8864 catcagtcaccatagaatctactgttatttccggaagaggtgtcactgtagggaatagag 8923
Query: 445 gggcaaatactcttttgaatttgaaacagtcttctttctcacaggcacttcgtaggaaga 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8924 gggcaaatactcttttgaatttgaaacagtcttctttctcacaggcacttcgtaggaaga 8983
Query: 505 ggaatatccggcaaaaaatcggcaataatctaatcagattccttttgaaaactgtgtcct 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8984 ggaatatccggcaaaaaatcggcaataatctaatcagattccttttgaaaactgtgtcct 9043
Query: 565 gtgcttgctctataattgtaatcagaacaccgttagcgtaacttgcagtcgtcaaatttg 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9044 gtgcttgctctataattgtaatcagaacaccgttagcgtaacttgcagtcgtcaaatttg 9103
Query: 625 gaacgcagcctttctctttgatgaatggcttgaaacaccattcaataacttggcctaaga 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9104 gaacgcagcctttctctttgatgaatggcttgaaacaccattcaataacttggcctaaga 9163
Query: 685 atttag-tcttaaaggatttttcgctggatcctttgagaatggagctaacttcgggttct 743
|||||| |||||||||||||| |||||||||||| ||||||||||||||| ||||||||
Sbjct: 9164 atttagttcttaaaggattttccgctggatccttgaagaatggagctaactccgggttct 9223
Query: 744 ggagaattcttcttagcaagagatattttgcatttacaaaaattcttttcctttgtggga 803
||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct: 9224 ggagaattcttcttagcaagagatattttgcatttac-aaaattcttttcctttgt-gga 9281
Query: 804 taaatcatctt 814
|||||||||||
Sbjct: 9282 taaatcatctt 9292
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7732
Number of Sequences: 1807
Number of extensions: 7732
Number of successful extensions: 60
Number of sequences better than 1.0e-20: 1
length of query: 886
length of database: 10,358,551
effective HSP length: 16
effective length of query: 870
effective length of database: 10,329,639
effective search space: 8986785930
effective search space used: 8986785930
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)