BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC5ZD01RM1.SCF screened BAC_end
(877 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig57 880 0.0
3x_Contig216 704 0.0
>3x_Contig57
Length = 884
Score = 880 bits (444), Expect = 0.0
Identities = 457/460 (99%), Gaps = 1/460 (0%)
Strand = Plus / Plus
Query: 44 gcttctcttactgtctgagtacgtccatgcaaatcctgttgttggcaatatcccgttgat 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 gcttctcttactgtctgagtacgtccatgcaaatcctgttgttggcaatatcccgttgat 484
Query: 104 ctttggaaggatgcatctgttggtctaccatttacgaggacgtcaccggtaatgacacct 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 ctttggaaggatgcatctgttggtctaccatttacgaggacgtcaccggtaatgacacct 544
Query: 164 gtgctaatacggtcagccaaagcatccaacaaagtagtcttaccagcacctgatgatccc 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 gtgctaatacggtcagccaaagcatccaacaaagtagtcttaccagcacctgatgatccc 604
Query: 224 attagtgcagttaaagttccaggcttgacccaaccatcaacattatccaaaattcttctc 283
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 attagtgcagttaaagtaccaggcttgacccaaccatcaacattatccaaaattcttctc 664
Query: 284 gtttcagtcttgatttgaacatcat-aacagatattcttccaaaataccacttggtcaga 342
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 665 gtttcagtcttgatttgaacatcataaacagatattcttccaaaataccacttggtcaga 724
Query: 343 tccaatcttttcagccatcttttcattggagctatcacttttttcgtcttgggaatcatt 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 tccaatcttttcagccatcttttcattggagctatcacttttttcgtcttgggaatcatt 784
Query: 403 cccgtttgtcatgtcttttagtaaactgtcattcgattcgatatcatttttcaagttctg 462
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 cccgtttgtcaagtcttttagtaaactgtcattcgattcgatatcatttttcaagttctg 844
Query: 463 attcttctttttgagcttcattaagacggaccttgggaag 502
||||||||||||||||||||||||||||||||||||||||
Sbjct: 845 attcttctttttgagcttcattaagacggaccttgggaag 884
>3x_Contig216
Length = 1898
Score = 704 bits (355), Expect = 0.0
Identities = 378/382 (98%), Gaps = 3/382 (0%)
Strand = Plus / Plus
Query: 485 aagacggaccttgggaagactgtcatctcacccttttgcatctcacctttgttatactcg 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aagacggaccttgggaagactgtcatctcacccttttgcatctcacctttgttatactcg 60
Query: 545 attaatagtaaatataccgcaaggaagaaaacagcataacaaagaacaataccccaattt 604
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 61 attaatagtaaatataccgcaag-aagaaaacagcataacaaagaacaataccccaattt 119
Query: 605 ctccatctgtaactgtctttataagaaaaagactcttccatgtatgcagtaccgctaaca 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 ctccatctgtaactgtctttataagaaaaagactcttccatgtatgcagtaccgctaaca 179
Query: 665 tatgcagaccctggttcagaaccgacaacagaacatattttaagtgctaatggtagttca 724
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 tatgcagaccctggttcagaaccgacaacagaacatattttaagtgctaatggtagttca 239
Query: 725 tcgtactccccacctgctggaataaattgcgaacactcaaaggttcttccagcgaactcg 784
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 tcgtactccccacctgctggaataaattgcgaacactcaaaggttcttccagcgaactcg 299
Query: 785 ntcgctaccattgcttccatagatctagcaattgggttcaaataatacaaccattttcga 844
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 300 ttcgctaccattgcttccatagatctagcaattgggttcaaataatacaacca-tttcga 358
Query: 845 ccaaccaaggaatattgccctt 866
|||||||| |||||||||||||
Sbjct: 359 ccaaccaa-gaatattgccctt 379
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6658
Number of Sequences: 1807
Number of extensions: 6658
Number of successful extensions: 62
Number of sequences better than 1.0e-20: 2
length of query: 877
length of database: 10,358,551
effective HSP length: 16
effective length of query: 861
effective length of database: 10,329,639
effective search space: 8893819179
effective search space used: 8893819179
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)