BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC5ZD02FM1.SCF screened BAC_end
(917 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1185 1267 0.0
>3x_Contig1185
Length = 4803
Score = 1267 bits (639), Expect = 0.0
Identities = 715/735 (97%), Gaps = 14/735 (1%)
Strand = Plus / Minus
Query: 88 tcctaacttgttcgatgcattacaaggtttagatttgaataatgaacttaaaagattgct 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4368 tcctaacttgttcgatgcattacaaggtttagatttgaataatgaacttaaaagattgct 4309
Query: 148 ttctgtgttgcactcatatttatcaacttttgaaaatacaaaggtgctatattttgcttc 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4308 ttctgtgttgcactcatatttatcaacttttgaaaatacaaaggtgctatattttgcttc 4249
Query: 208 gaattattcatcatttaccgctaaaaacttcatggttttgccccgaaacaccatcgaaag 267
|||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct: 4248 gaattattcatcatttaccgct-aaaactt---------gccccgaaacaccatcgaaag 4199
Query: 268 tttggaaatctttgaaaattcgaccactaacaaaaccaatggttctctattgtgggttat 327
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4198 tttggaaatctttgacaattcgaccactaacaaaaccaatggttctctattgtgggttat 4139
Query: 328 ggatcatacgagaactcaatttggttatagacttttacgaaaatggatatctaaaccact 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4138 ggatcatacgagaactcaatttggttatagacttttacgaaaatggatatctaaaccact 4079
Query: 388 gatagatttaaaatcgatccttgacaggcaagatgctatcacttgcattatgaaagaagt 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4078 gatagatttaaaatcgatccttgacaggcaagatgctatcacttgcattatgaaagaagt 4019
Query: 448 tcacagcatttttttcgaatccttcaacgaactactgagaaaaagcatagaccttgaacg 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4018 tcacagcatttttttcgaatccttcaacgaactactgagaaaaagcatagaccttgaacg 3959
Query: 508 cgcactcaatagaatagcttatggtagtacatcaagaaaagaagtttatttcttcctaaa 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3958 cgcactcaatagaatagcttatggtagtacatcaagaaaagaagtttatttcttcctaaa 3899
Query: 568 acagattgcaactttcgcatctcttttcaaatcacatcacacttttcattcatgaccaac 627
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 3898 acagattgcaactttcgcatctcttttcaaatcacatcacac-tttcattcatgaccaac 3840
Query: 628 tgcataaagagaattcagcattgcgcaaaacctccttgtctattgttcaatattttgcaa 687
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 3839 tgcataaagagaattcagcattgcgcaaaacctcc-tgtctattgttcaatattttgcaa 3781
Query: 688 aacttagatgcattttttagtgctactgatcttcctctttttctacaaatgatcaacgtt 747
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3780 aacttagatgcattttttagtgctactgatcttcctctttttctacaaatgatcaacgtc 3721
Query: 748 catgctgttttggataaagattcccataaaaacgtcattcgattcctttaatttgaataa 807
|||||| ||||||||||||||||||||||||||||| |||| | |||||||||||||||
Sbjct: 3720 gatgctgctttggataaagattcccataaaaacgtca-tcgaattctttaatttgaataa 3662
Query: 808 gtattgatttcccgg 822
||| |||||||||||
Sbjct: 3661 gta-tgatttcccgg 3648
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8217
Number of Sequences: 1807
Number of extensions: 8217
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 1
length of query: 917
length of database: 10,358,551
effective HSP length: 16
effective length of query: 901
effective length of database: 10,329,639
effective search space: 9307004739
effective search space used: 9307004739
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)