BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC5ZD02RM1.SCF screened BAC_end
(907 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1651 779 0.0
3x_Contig1782 728 0.0
3x_Contig869 131 3e-30
3x_Contig1717 127 4e-29
3x_Contig278 103 6e-22
>3x_Contig1651
Length = 13087
Score = 779 bits (393), Expect = 0.0
Identities = 409/413 (99%), Gaps = 1/413 (0%)
Strand = Plus / Plus
Query: 43 cttttcaagccgaactaatctatatcagatgtgtttttataagatgaaaggattgcagag 102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12668 cttttcaagccgaactaatctatatcagatgtgtttttataagatgaaaggattgcagag 12727
Query: 103 gactaatacgttgaaattaaggttcttaaaaaaacagattggagatttacgtgtcatcat 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12728 gactaatacgttgaaattaaggttcttaaaaaaacagattggagatttacgtgtcatcat 12787
Query: 163 aagtttgaatagaattacggaatattaaaaacatctaaaccagtaccactcacttttata 222
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 12788 aagtttgaatagaattacggaatattaaaaacatctaaaccagtaccactcaccactata 12847
Query: 223 attcccagaaaagtgattatttggtgttgcattggagaagacacacattttgtttccgac 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12848 attcccagaaaagtgattatttggtgttgcattggagaagacacacattttgtttccgac 12907
Query: 283 ggt-catatatctattacagtaccttggtagttaataagaggagaaactaaaaaaagagg 341
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12908 ggtgcatatatctattacagtaccttggtagttaataagaggagaaactaaaaaaagagg 12967
Query: 342 tcctacccggattcgaaccggggttgttcggatcaaaaccgaaagtgataaccactacac 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12968 tcctacccggattcgaaccggggttgttcggatcaaaaccgaaagtgataaccactacac 13027
Query: 402 tatagaaccgaaattcttacgaaggcgccaaaaaacactggtttcaaattgcg 454
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13028 tatagaaccgaaattcttacgaaggcgccaaaaaacactggtttcaaattgcg 13080
>3x_Contig1782
Length = 24703
Score = 728 bits (367), Expect = 0.0
Identities = 418/430 (97%), Gaps = 5/430 (1%)
Strand = Plus / Minus
Query: 455 ggcagtagcatgtcttcagccaactgccctctctcattcacaaaattaggttcgcatatt 514
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 24703 ggcagtagcatgtcttcagccaactgcgttctctcattcacaaaattaggttcgcatatt 24644
Query: 515 caccacacatagatcc-aacaaatgggaaattaaattgtagcctttgtagcttgttaaat 573
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24643 caccacacatagatcccaacaaatgggaaattaaattgtagcctttgtagcttgttaaat 24584
Query: 574 ctaaaataacgttacctcttttctttccattattattcagacattttcatttaaataatt 633
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24583 ctaaaataacgttacctcttttctttccattattattcagacattttcatttaaataatt 24524
Query: 634 gctgtctttattttaattgttaaatgtccaaactaactcacaaatgttctaattcacaaa 693
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24523 gctgtctttattttaattgttaaatgtccaaactaactcacaaatgttctaattcacaaa 24464
Query: 694 gcaacttcggctaaggtcaaacttatagtgaaaattacttcagttagtgcattagatgct 753
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24463 gcaacttcggctaaggtcaaacttatagtgaaaattacttcagttagtgcattagatgct 24404
Query: 754 gatgagtgaacggcagagcatagtatgcttcacttagcttgttccaaaaaaaaaagttaa 813
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 24403 gatgagtgaacggcagagcatagtatgcttcacttagcttgttccaaaaaaaaaagtaaa 24344
Query: 814 aaaacaaatgattttcgccaaggatcgaactgggggacgttctggggtggttaagcagat 873
||||||||||| ||||||| ||||||||||| |||||||||||| | |||||||||||
Sbjct: 24343 aaaacaaatga-tttcgcccaggatcgaact-ggggacgttctgcg--tgttaagcagat 24288
Query: 874 gccattaccg 883
||||| ||||
Sbjct: 24287 gccataaccg 24278
>3x_Contig869
Length = 2873
Score = 131 bits (66), Expect = 3e-30
Identities = 72/74 (97%)
Strand = Plus / Plus
Query: 339 aggtcctacccggattcgaaccggggttgttcggatcaaaaccgaaagtgataaccacta 398
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1005 aggtcgtacccggattcgaaccggggttgttcggatcaaaaccgaaagtgataaccacta 1064
Query: 399 cactatagaaccga 412
||||||| ||||||
Sbjct: 1065 cactatacaaccga 1078
>3x_Contig1717
Length = 18389
Score = 127 bits (64), Expect = 4e-29
Identities = 70/72 (97%)
Strand = Plus / Minus
Query: 339 aggtcctacccggattcgaaccggggttgttcggatcaaaaccgaaagtgataaccacta 398
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1767 aggtcgtacccggattcgaaccggggttgttcggatcaaaaccgaaagtgataaccacta 1708
Query: 399 cactatagaacc 410
||||||| ||||
Sbjct: 1707 cactatacaacc 1696
>3x_Contig278
Length = 1114
Score = 103 bits (52), Expect = 6e-22
Identities = 55/56 (98%)
Strand = Plus / Plus
Query: 339 aggtcctacccggattcgaaccggggttgttcggatcaaaaccgaaagtgataacc 394
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 993 aggtcgtacccggattcgaaccggggttgttcggatcaaaaccgaaagtgataacc 1048
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8603
Number of Sequences: 1807
Number of extensions: 8603
Number of successful extensions: 95
Number of sequences better than 1.0e-20: 5
length of query: 907
length of database: 10,358,551
effective HSP length: 16
effective length of query: 891
effective length of database: 10,329,639
effective search space: 9203708349
effective search space used: 9203708349
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)