BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC5ZD03FM1.SCF screened BAC_end
(1231 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1770 613 e-175
>3x_Contig1770
Length = 29267
Score = 613 bits (309), Expect = e-175
Identities = 381/401 (95%), Gaps = 4/401 (0%)
Strand = Plus / Minus
Query: 126 taagctcttgatgttnggctttaatttcatgttggcagaattatcaacaaaaattgacct 185
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10009 taagctcttgatgtttggctttaatttcatgttggcagaattatcaacaaaaattgacct 9950
Query: 186 taaatgggataaaatggtcgattaataggtcagcgaaccacttattgaaacgaaaagcca 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9949 taaatgggataaaatggtcgattaataggtcagcgaaccacttattgaaacgaaaagcca 9890
Query: 246 gtaaatgagatgattgcatgctacacattgcatataaccttgttaattcgagtgaagtgg 305
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9889 gtaaatgagatgagtgcatgctacacattgcatataaccttgttaattcgagtgaagtgg 9830
Query: 306 ccaatctgggccatgatagtggtatatgttacatggattgcactgaaattacgttacccg 365
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 9829 ccaatctgggccatgatagtggtttatgttacatggattgcactgaaattacgttacccg 9770
Query: 366 gcctctggattgatccctcaatatcaaaacctaaacaaagttgaagagctgatatgtaca 425
| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 9769 gtctctggattgatccctcaatatcaaaatctaaacaaagttgaagagctgatatgtaca 9710
Query: 426 ttccagcaaacagagctccaactcataaaaagggcggnnaaataggnctcactcaacttc 485
|| ||| ||| || |||| || |||||||||||| || ||||||| ||| ||||| ||
Sbjct: 9709 tttcagtaaagagtgctcgaagtcataaaaagggtggttaaataggt-tcattcaac-tc 9652
Query: 486 tgtgagccaatattctctgtcaataacagaaattctaatct 526
|||||||||||||| |||||||||||||| |||||||||||
Sbjct: 9651 tgtgagccaatatt-tctgtcaataacag-aattctaatct 9613
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6609
Number of Sequences: 1807
Number of extensions: 6609
Number of successful extensions: 35
Number of sequences better than 1.0e-20: 1
length of query: 1231
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1215
effective length of database: 10,329,639
effective search space: 12550511385
effective search space used: 12550511385
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)