BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC5ZD03RM1.SCF screened BAC_end
(1035 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig220 650 0.0
>3x_Contig220
Length = 1055
Score = 650 bits (328), Expect = 0.0
Identities = 420/451 (93%), Gaps = 2/451 (0%)
Strand = Plus / Minus
Query: 84 ataataaacagnctgattatcataagagaaggttccttaggaatnnggatgaagaagcgg 143
||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct: 456 ataataaacagtctgattatcataagagaaggttccttaggaatttggatgaagaagtgg 397
Query: 144 atgaagagcaagtgaaagatgtgaaaagaaggaaaaccgataaggatggtgataaggaag 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 atgaagagcaagtgaaagatgtgaaaagaaggaaaaccgataaggatggtgataaggaag 337
Query: 204 aggaaagnggcggnggatatacgatgcccaagacttcgcagcatattataactgagctct 263
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 aggaaagtggcggtggatatacgatgcccaagacttcgcagcatattataactgagctct 277
Query: 264 cggaagagatggttactgaagttccaggggtacgtaatcttcagctctttaagccttcag 323
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 276 cggaagagatggttactgaagttccaggggtacgtaatcttcagttctttaagccttcag 217
Query: 324 acagacaacatttcgcaatttngcncgatgaaaggtctccanaagatatgactgaagagg 383
||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||
Sbjct: 216 acagacaacatttcgcaattttgtttgatgaaaggtctccagaagatatgactgaagagg 157
Query: 384 aaaggaaacagaaacaggttttaaaattggtacttaaggggaaaaatggattaccaagct 443
||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct: 156 aaaggaaacagaaacaggttttaaaattggtacttaaggtgaaaaatgggttaccaagct 97
Query: 444 ttangaaaataactcttaaagcactcactctataaggtacc-ctttttttgtggtaccat 502
|| ||||||| |||| | ||||||||||| | |||| ||| || ||| | || |||||
Sbjct: 96 ctaggaaaatagctctcagagcactcactc-aaaaggcacctctctttgcggggcaccat 38
Query: 503 tgtttattttattctatcttgctcattcttc 533
|||| |||| |||||||||||| ||||||||
Sbjct: 37 tgttgatttgattctatcttgcccattcttc 7
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 32,446
Number of Sequences: 1807
Number of extensions: 32446
Number of successful extensions: 1983
Number of sequences better than 1.0e-20: 1
length of query: 1035
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1019
effective length of database: 10,329,639
effective search space: 10525902141
effective search space used: 10525902141
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)