BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC5ZD04FM1.SCF screened BAC_end
(870 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig369 658 0.0
>3x_Contig369
Length = 1572
Score = 658 bits (332), Expect = 0.0
Identities = 416/432 (96%), Gaps = 9/432 (2%)
Strand = Plus / Minus
Query: 284 ggacgctacctgggggctcgcactcaacaacggagagataatcttaactatattttctga 343
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1337 ggacgctaccggggggctcgcactcaacaacggagagataatcttaactatattttctga 1278
Query: 344 accgacaataatttgattcttatcacataagtaatcaagtattattccgtaggagtccca 403
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1277 accgacaataatttgatgcttatcacataagtaatcaagtattattccgtaggagtccca 1218
Query: 404 atctttcacgatgctatcaattccggacgccttataaaaatgacccttagtgaatacata 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1217 atctttcacgatgctatcaattccggacgccttataaaaatgacccttagtgaatacata 1158
Query: 464 gtcagtcgctttgtgagcactttctttgatgttattcttcaatagatcttgtagtacctc 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1157 gtcagtcgctttgtgagcactttctttgatgttattcttcaatagatcttgtagtacctc 1098
Query: 524 gtcatttctcttt-accacgcaata-taacatatttgact-gtttttagtacattgcagt 580
||||||||||||| ||||||||||| |||||||||||||| ||||| |||||||||||||
Sbjct: 1097 gtcatttctctttaaccacgcaatattaacatatttgactggttttaagtacattgcagt 1038
Query: 581 ctca-tttttctgctcttcca-gacaaat-ttagattgtc-tgctgatagccca-ctcat 635
|||| |||||||||||||||| ||||||| | |||||||| ||||||||||||| |||||
Sbjct: 1037 ctcattttttctgctcttccaggacaaatctaagattgtcttgctgatagcccagctcat 978
Query: 636 cattgata-tacgatgttctgattccttttgtgatattctgtaagggatactaacgggcc 694
|||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct: 977 cattgatattacgatgttctgattccttttgtgatattcgttaagggatactaacgtgcc 918
Query: 695 ttcttttaccat 706
||||||||||||
Sbjct: 917 ttcttttaccat 906
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6656
Number of Sequences: 1807
Number of extensions: 6656
Number of successful extensions: 59
Number of sequences better than 1.0e-20: 1
length of query: 870
length of database: 10,358,551
effective HSP length: 16
effective length of query: 854
effective length of database: 10,329,639
effective search space: 8821511706
effective search space used: 8821511706
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)