BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC5ZD04RM1.SCF screened BAC_end
(897 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1529 918 0.0
>3x_Contig1529
Length = 11812
Score = 918 bits (463), Expect = 0.0
Identities = 470/471 (99%), Gaps = 1/471 (0%)
Strand = Plus / Plus
Query: 49 tcattactttgactactgcattgatttacttatttggccaattcccactggcaggcatta 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11290 tcattactttgactactgcattgatttacttatttggccaattcccactggcaggcatta 11349
Query: 109 ctaaggaatctgttgatgtgaaggaccctatcttcttcttgcgtggtgttttcgctgccg 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11350 ctaaggaatctgttgatgtgaaggaccctatcttcttcttgcgtggtgttttcgctgccg 11409
Query: 169 aaccacgcactcttttagagtttggtattttcccaccaattgcaactgcattgatcttgc 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11410 aaccacgcactcttttagagtttggtattttcccaccaattgcaactgcattgatcttgc 11469
Query: 229 aattg-ttggcaggtttcaaattgatcaaagtcaacttcaaccaaagaactgatagagaa 287
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11470 aattgcttggcaggtttcaaattgatcaaagtcaacttcaaccaaagaactgatagagaa 11529
Query: 288 ttgttccaaacgttgatcaaaattgtttccattggcagttatgccatcttagctaacatt 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11530 ttgttccaaacgttgatcaaaattgtttccattggcagttatgccatcttagctaacatt 11589
Query: 348 ttcattgcatcaggttactatggcgaagatttatctctaatggctaaatttttgattaac 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11590 ttcattgcatcaggttactatggcgaagatttatctctaatggctaaatttttgattaac 11649
Query: 408 agtcaattgatcggcgccggtttctttgtgaccttgttgatcgaagttattgacaagggg 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11650 agtcaattgatcggcgccggtttctttgtgaccttgttgatcgaagttattgacaagggg 11709
Query: 468 catgggtttgcctctggtgccatggctattatcgccatttctctgtctact 518
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11710 catgggtttgcctctggtgccatggctattatcgccatttctctgtctact 11760
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7091
Number of Sequences: 1807
Number of extensions: 7091
Number of successful extensions: 37
Number of sequences better than 1.0e-20: 1
length of query: 897
length of database: 10,358,551
effective HSP length: 16
effective length of query: 881
effective length of database: 10,329,639
effective search space: 9100411959
effective search space used: 9100411959
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)