BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC5ZD05FM1.SCF screened BAC_end
(903 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1553 1057 0.0
>3x_Contig1553
Length = 8593
Score = 1057 bits (533), Expect = 0.0
Identities = 638/669 (95%), Gaps = 3/669 (0%)
Strand = Plus / Plus
Query: 89 tcacgtaattacagtgatattctatgcaaaccgcaggttatccatgaagaggaagatgag 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4099 tcacgtaattacagtgatattctatgcaaaccgcaggttatccatgaagaggaagatgag 4158
Query: 149 taagttatataataaaacaataactgcaactaagagtgttaataacaggaaaactttttt 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4159 taagttatataataaaacaataactgcaactaagagtgttaataacaggaaaactttttt 4218
Query: 209 tttcttttaaatatgcgaggtaaactgattcgctctcataatataaataggaacatgatg 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4219 tttcttttaaatatgcgaggtaaactgattcgctctcataatataaataggaacatgatg 4278
Query: 269 actcaaggtgagtatgacaagaactataatcattctgatttgcttctttcttctagatga 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4279 actcaaggtgagtatgacaagaactataatcattctgatttgcttctttcttctagatga 4338
Query: 329 tggcatgtggctgttacacatgatcctaagaattcatgagaaaatggtgtgctgatatga 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4339 tggcatgtggctgttacacatgatcctaagaattcatgagaaaatggtgtgctgatatga 4398
Query: 389 gaagttttgatgaccacttcaggtagaaccttccatctccatatcatttcgtattcgtca 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4399 gaagttttgatgaccacttcaggtagaaccttccatctccatatcatttcgtattcgtca 4458
Query: 449 cgttttccatgaatgtatattcttaggtattccaaatatacgatgtagaaataaacgccg 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4459 cgttttccatgaatgtatattcttaggtattccaaatatacgatgtagaaataaacgccg 4518
Query: 509 aggccagtgagtaagtgccaccatccatgtaaatttagcaatactcctagtgggtacctt 568
|||||||||||||||||||||||||||||||| | |||||||||||||||||| |||||
Sbjct: 4519 aggccagtgagtaagtgccaccatccatgtaattctagcaatactcctagtggtaacctt 4578
Query: 569 aaatatgatcttcttattgtgatccaaaactgacagaaatgaac-ttaagtttgcagacc 627
|||||||||||||| || |||||||||||||||||||||||||| | ||||| |||||
Sbjct: 4579 aaatatgatcttctaatagtgatccaaaactgacagaaatgaacatcaagttgccagacg 4638
Query: 628 aaataaccagcccgaaatatgtggattcccagttacatagcatttttgtaggttaccttt 687
|||||||||||| |||||||| ||| || ||| |||||||| ||||||||||||| |||
Sbjct: 4639 aaataaccagccagaaatatggtgataccaagtaacatagca-ttttgtaggttacgttt 4697
Query: 688 aacaacccggattgtttacaaccggggtggggagtttgaagggcaaacaaataaccattg 747
| ||| |||||| |||||||| | | |||| ||||||||||| || |||||||| || |
Sbjct: 4698 agcaa-ccggatcgtttacaaactgtgtggtgagtttgaaggcaaaccaaataacgatag 4756
Query: 748 cgttgatta 756
|||||||||
Sbjct: 4757 cgttgatta 4765
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7446
Number of Sequences: 1807
Number of extensions: 7446
Number of successful extensions: 70
Number of sequences better than 1.0e-20: 1
length of query: 903
length of database: 10,358,551
effective HSP length: 16
effective length of query: 887
effective length of database: 10,329,639
effective search space: 9162389793
effective search space used: 9162389793
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)